Gene Information

Name : GPOL_c43590 (GPOL_c43590)
Accession : YP_005284728.1
Strain : Gordonia polyisoprenivorans VH2
Genome accession: NC_016906
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4948442 - 4949287 bp
Length : 846 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCCGTCTTTCCGCACGCGACCTCGTCGTCGGCTACGACGACCGTATCGTCATCGACGGTCTCGACGTCGACATCCC
CGACGCGGCGATCACCACGATCATCGGCCCCAACGGCTGCGGCAAATCGACGCTACTGCGGTGTCTGGCGCGGCTGCTGC
CGGCCCGCTCGGGCGTCGTGCGCCTCGACGGCACCGACATCACCAAGATCAAGCCGAAAACCGTCGCCCGCACGCTGGGC
ATCCTGCCGCAGAATCCCGTTGCGCCCGAAGGACTCACCGTCGAGGACCTGGTCAGCCGAGGCCGTCACCCCTACCAGAA
GTGGTATCAGCAGGCCTCCGCCGAGGACGAGGCCGCCGTCGCACTGGCCCTGGAACTGACCTCGACGACCGACCTCGCCG
ACCGCACCCTCGACGCGCTCTCCGGCGGTCAGCGCCAACGGGTCTGGATCGCGCTCGCGCTGGCGCAGGGCACCGACCTG
TTGCTGCTCGACGAGCCGACCACCTACCTCGACCTCGCGCATTCCCTCGAGGTCCTCGACCTCGTGCACTCCCTCAAGAC
CGAGCACGGCAAGACCGTCGTCATGGTGCTACACGACCTGAATCTCGCTGTGCGCTACAGTGATTCACTGTTCGTGATGA
ATGACGGACAACTGGTCCGACATGGCTCACCCGACGAGGTGATCACCGCCGAACTCCTCGACGACGCCTTCGGCCTGCGC
GCGCAGGTGGTCACCGACCCGGTCTTCGGTGGCCCGATGATCGTGCCGATCGGCGCGCACAGTGCCCGTGGGATGACCAG
TGCACGCGGTATGACCAGTGCACGCGGGGTACTCAGCGAGCCGTAG

Protein sequence : 
MSRLSARDLVVGYDDRIVIDGLDVDIPDAAITTIIGPNGCGKSTLLRCLARLLPARSGVVRLDGTDITKIKPKTVARTLG
ILPQNPVAPEGLTVEDLVSRGRHPYQKWYQQASAEDEAAVALALELTSTTDLADRTLDALSGGQRQRVWIALALAQGTDL
LLLDEPTTYLDLAHSLEVLDLVHSLKTEHGKTVVMVLHDLNLAVRYSDSLFVMNDGQLVRHGSPDEVITAELLDDAFGLR
AQVVTDPVFGGPMIVPIGAHSARGMTSARGMTSARGVLSEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-54 57
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-41 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-38 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-44 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-44 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-44 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-50 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-50 45
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-27 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-38 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-38 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-38 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GPOL_c43590 YP_005284728.1 putative ABC transporter ATP-binding protein BAC0164 Protein 1e-38 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GPOL_c43590 YP_005284728.1 putative ABC transporter ATP-binding protein VFG0925 Protein 3e-47 49
GPOL_c43590 YP_005284728.1 putative ABC transporter ATP-binding protein VFG1042 Protein 9e-39 47