|
Name : lysS1 (GPOL_c03140) Accession : YP_005280753.1 Strain : Gordonia polyisoprenivorans VH2 Genome accession: NC_016906 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase LysS Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 376618 - 380019 bp Length : 3402 bp Strand : + Note : - DNA sequence : ATGGCGGTCGAGACCGGAGTGCAGCAGGCCCCCGACGACGAGAAGCAGCACGGATCGGTGCCGCCGGATCGGACAGCGGC CGAACGCCGTTCGGCTGATCTGCTCGACCAGATCCGGCATCCACGGGGTTTCGGGCACAACGCGCCGCGGATCGCCGGCA CCGTGGTGGGCGTCATGGCGGCAATTGCGTTGGCGTCGAGCGTTTTTCCGTTCTTCCGGCATTGGATTCACGTTCCTCGT GACTACGTCGACAACTACATCGTCGCGATGCCGGAGACGAGCTTCGCTTGGGCTTATGTGCTGGCATTGGTGGCGATCGC ACTCGCCGCCCGCAAGCGCATCGCCTGGTGGATCTGCGTCATCCTGCTGGTGCTGTTCATGCTCACCAACGCACTGCTCC TGATCCCGGCGATCGGCTCCGATCTGGACATGACCCGCACCGAGCGGATCAACACCGGGATCGGGCTGGCGATACAGGTG GCCATCCTCTTCTTCCTGGTTCTCACGTTCCGGCAGTTCTACACCCGGGTCCGCCGCGCCGCGTTGCTGCGTGCGCTCGG TGTGCTGATCACCGGGCTGGTTGTTGCCACCATGCTGGGCTGGGGTCTGGTGGTGCTGGTACCCGGCAGCCTGGAGTCGG GGGAGCGTCTGCCGTATGCGTTCAACCGCGTCGTCGCCTTCGCGACCATCGATCAGCGCACCTTCGACGGCCACCACACC CATCCGTGGATCAACGGGCTGCTGGGACTGTTCGGGGCTCTGGCCCTGATCGCCGCCGCGATCGTGCTGTTCCGGTCTCA GCGGCTCAAGTCGCTGATCACCGCGGAGGACGAACGACTGATCCGCGCGCTCATCGACCGGTTCGGCGACGACGACTCGC TGGCCTACTTCTCCACCCGCCGCGACAAGGCCGTGGTGTTCTCGCTCGACGGTCGGGCGGCGATCACCTATCGCGTCGAA CTCGGCGTCGGACTGGCCGGCGGTGATCCGATCGGCGACCCGGACTCCTGGTCGGGGGCGATCGCGGAGTTCCTGACGCT GTGCGAGCGGTACGGCTGGCATCCGGCGGCGATGGGCGCCAGCGAGCGCGGCGCCGAGGCATACGACGCGGCGGGTTTCG GCACGCTCAACATCGGTGACGAGGCGATCATCCACACCCGCGACTTCACGCTGTCGGGACCGGCGATGAAGAGTGTGCGC CAGGCGGTCACCCGTAATCGGCGGGCCGGGGTCACCGTACGAATCCGACGGCACAGCGAATTGTCGGACGCACAGATGGC CGAGGCGATCGCCCGCGCCGACGCGTGGCGCGACACCGACGAGGAACGCGGCTTCGCGATGGCACTCTCGCGACTCGGCG ACCCCGCCGATGGCAACTGCCTGCTCGTCGAGGCGATCCAGAACGAGGGCACCGACGACGAGAAGGTCATCGGCTTGCTG TCCTTCGTCCCGTGGGGTCGGCGTGGGGTCTCGCTCGACCTCATGCGCCGCGACCGCAACGGTGTCAACGGCGTGGTGGA GACGATGGTCGTCGAGCTGTGTCAGCGTGCCGAACAGGTCGGCGTCACCGACATCTCCCTGAATTTCGCGACGTTCCGCG CATTCTTCGAGCACGGCGGGCAGATCGGTGCCGGACCGGTGATGCGGGCGAGTTACTCGGCGTTGATGTTCGGCTCCCGG TTCTTCCAGATGGAGTCGCTCTATCGCTCCAACGCGAAGTACCTGCCGGATTGGCAGCCGCGGTACCTGTGCTTCGAGGA CGCCCGGATGCTCCCGCGTGCCGGGCTGGCGAGCATCGTCACCGAGGGTTTCGTGCGGCTGCCGCGCTTCGGCCGCAAGG AACAGTACGAAGCCGGCGAGCCGTCGGTACCGCAGGGAGTCGACGTCGACGCGCTCGTCGCGCAGTTCGCCGAGGAAGCC GATCAGCAGGCGGTCTCCGTGCATCGGCCCGAGCAGGTCCGGGTGCGGATGGCCAAGCTCGAACGGCTCATCGCCGAGGG CTTCGACCCGTACCCGCCTGCCGACGCGCCCACCCACACCATCGCCGCGGCCCGGGAACTACCGCAGGGCACCCAGGTCA CCATCGCCGGCCGCATCACCCGGTTGCGTGACTTCGGCAAAGTGATCTTCGCCGACCTCCACGACTGGTCGGGGCAGGTG CAGTTGCTCATCGAGGATTCCCGGATCATCCCGGGCACACCGGATTTCGGCTCCGATGTGGACCTCGGTGATCTCGTCGA GGTGCGTGGCATGCTCGGCGAGAGCCGCAAGGGCGAGTTGTCGGTGCTGATCGACGCGTGGCGGATCAACGGCAAATGCC TGCGTCCGCTGCCCGACAAGTGGGCCGGTCTGACCGACCCGGAAGCCCGTGTGCGCCAACGCTATCTGGACCTCGCGACC AACGCCCGCAGCCGGGACCTGCTCAAGACCCGCAGCGTCGTCGTCAAAGCGCTGCGCGACTTCCTCGCCACCCGGGATTT CCTGGAGGTGGAGACGCCGATCCTGCAGCGAATCCACGGCGGCGCCAACGCCACCCCGTTCCAGACGCACATCAACGCCT ACAACCTCGACCTCTATCTGCGTATCGCACCCGAGCTGTACCTCAAGCGGCTCTGCGTCGGCGGGGTGGAGAAGGTCTAC GAGATCGGGCGGAACTTCCGCAACGAGGGCGTCGACTTCAGCCACAACCCCGAGTTCACCAGCCTCGAAGCCTATGAGGC GCACAGTGATTACCTGAAGATGCTGGATCTGACCCGCGAGATGATCCAGTTCGCCGCGACCGCGGCGCACGGTGAGCCGG TGATCTACCGGACCGGTGACGACGGCACCGTCGAGCGCATCGACATCTCCGGTGACTGGCCGGTCAAGACCGTGCACGAG GTGGTCTCCGAGGGTGCCGGTGAGGAGGTCACGCCGGAGACGAGCGCCGAGGACCTGCGTCGGATCTGTGATCGGCTGGA GATCGCACACCGCCCCGACTGGGACGCGGGGGCGCTGGTGCTCGAACTGTATGAGCACCTCGGTGAGGACCGCACGACGT TCCCGACGTTCTACATCGACTTCCCCACGTCGACCTCGCCGCTCACCCGTGCCCACCGCAGCCGCGCGGGTGTCGCCGAA CGGTGGGATCTCGTCGCCTGGGGCGTCGAGCTCGGCACCGCCTACACCGAGCTCACCGATCCGGTCGAACAACGCAAACG GCTGACGGCGCAATCGATCCTGGCCGCCGACGGTGATCCGGAGGCGATGGAACTCGACGAGGACTTCCTCGAGGCACTCG AATACGCGATGCCGCCCACCGGCGGACTCGGCGTCGGCGTCGACCGCGTCGTCATGCTGATCACCGGTCAGTCGATCCGC GAATCGCTGCCGTTCCCGTTGGTCAAGCCCGACGAGGGATAA Protein sequence : MAVETGVQQAPDDEKQHGSVPPDRTAAERRSADLLDQIRHPRGFGHNAPRIAGTVVGVMAAIALASSVFPFFRHWIHVPR DYVDNYIVAMPETSFAWAYVLALVAIALAARKRIAWWICVILLVLFMLTNALLLIPAIGSDLDMTRTERINTGIGLAIQV AILFFLVLTFRQFYTRVRRAALLRALGVLITGLVVATMLGWGLVVLVPGSLESGERLPYAFNRVVAFATIDQRTFDGHHT HPWINGLLGLFGALALIAAAIVLFRSQRLKSLITAEDERLIRALIDRFGDDDSLAYFSTRRDKAVVFSLDGRAAITYRVE LGVGLAGGDPIGDPDSWSGAIAEFLTLCERYGWHPAAMGASERGAEAYDAAGFGTLNIGDEAIIHTRDFTLSGPAMKSVR QAVTRNRRAGVTVRIRRHSELSDAQMAEAIARADAWRDTDEERGFAMALSRLGDPADGNCLLVEAIQNEGTDDEKVIGLL SFVPWGRRGVSLDLMRRDRNGVNGVVETMVVELCQRAEQVGVTDISLNFATFRAFFEHGGQIGAGPVMRASYSALMFGSR FFQMESLYRSNAKYLPDWQPRYLCFEDARMLPRAGLASIVTEGFVRLPRFGRKEQYEAGEPSVPQGVDVDALVAQFAEEA DQQAVSVHRPEQVRVRMAKLERLIAEGFDPYPPADAPTHTIAAARELPQGTQVTIAGRITRLRDFGKVIFADLHDWSGQV QLLIEDSRIIPGTPDFGSDVDLGDLVEVRGMLGESRKGELSVLIDAWRINGKCLRPLPDKWAGLTDPEARVRQRYLDLAT NARSRDLLKTRSVVVKALRDFLATRDFLEVETPILQRIHGGANATPFQTHINAYNLDLYLRIAPELYLKRLCVGGVEKVY EIGRNFRNEGVDFSHNPEFTSLEAYEAHSDYLKMLDLTREMIQFAATAAHGEPVIYRTGDDGTVERIDISGDWPVKTVHE VVSEGAGEEVTPETSAEDLRRICDRLEIAHRPDWDAGALVLELYEHLGEDRTTFPTFYIDFPTSTSPLTRAHRSRAGVAE RWDLVAWGVELGTAYTELTDPVEQRKRLTAQSILAADGDPEAMELDEDFLEALEYAMPPTGGLGVGVDRVVMLITGQSIR ESLPFPLVKPDEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-162 | 42 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-161 | 42 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-162 | 42 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-162 | 42 |
