Gene Information

Name : GPOL_c12770 (GPOL_c12770)
Accession : YP_005281698.1
Strain : Gordonia polyisoprenivorans VH2
Genome accession: NC_016906
Putative virulence/resistance : Unknown
Product : integrase core domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1466229 - 1467080 bp
Length : 852 bp
Strand : -
Note : -

DNA sequence :
ATGCAGATCGCCCCGTCCACCTACTACGCCCACAAGCAACGCGGCCGGATCTCGGCGGCCGCGCTGGCCGAGGCCTACGC
CGCGCACGAGGTGTTCCGCCAGTTCACCAAGAACCGCAGTGTCTACGGGGTCCGCAAGATGCATCATCAGATGTGGCGAG
CAGGACACCCCATGGGTCGCGATCAGGTCGGCCGGCTGATGGGGATCTGCGGGATCTCCGGAGCAGTCCGGGGTTCTCAC
CGCACCGTTACCACCCGCCGCGATGACAAAGCGCCCCGGTTCCCGGATCATGTTGCCCGGCAATGGAATATAGCGGATCG
TCCGGATCGGTGGTGGGTGGCCGACTTCACCTACGTGTGGACGTTGGCCGGGTTCGTCTACGTGTCGTTCCTCGTCGATG
TGTTCTCCCGACGCATCCTCGGGTGGCGGGTCATGACCAGCAAGCACACCCCGTTGGTGACCAGTGTGGTCGAGCAAGCG
TTGTTCACTCGACGTAGGACCGTATTCAACTTCACTGCAACAGGTTTGGTGCACCACAGCGACGCCGGGAGTCAATACAC
GTCGCTGGCGTTTACCGCGGCATTGCGGGAGGCCGACATCACCGGATCCATTGGATCGGTTGGCGATGCCCTCGACAACG
CGCTGATGGAATCGACAATCGGGCTCTACAAGACCGAACTCATCAACACCGGTCGCACCTGGACCGACCGCGCCGAGGTC
GAACGCGAGACCGCAGCCTACGTGTTCTGGTTCAACACCGACCGCCTGCACTCGTCGCTGGGCTACTGCTCACCCATCGA
ATACGAGACGCGCTACCGTGAGAGCGTCACCTCCGAGACGGAGGTGGCATAA

Protein sequence :
MQIAPSTYYAHKQRGRISAAALAEAYAAHEVFRQFTKNRSVYGVRKMHHQMWRAGHPMGRDQVGRLMGICGISGAVRGSH
RTVTTRRDDKAPRFPDHVARQWNIADRPDRWWVADFTYVWTLAGFVYVSFLVDVFSRRILGWRVMTSKHTPLVTSVVEQA
LFTRRRTVFNFTATGLVHHSDAGSQYTSLAFTAALREADITGSIGSVGDALDNALMESTIGLYKTELINTGRTWTDRAEV
ERETAAYVFWFNTDRLHSSLGYCSPIEYETRYRESVTSETEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 2e-34 47
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-36 47
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 8e-37 47
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-41 47
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-43 45
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-41 45
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 45
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-43 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-43 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-43 45
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-42 45
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 8e-43 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 8e-43 45
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-29 45
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-39 45
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-42 44
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 5e-42 44
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 7e-41 44
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 7e-41 44
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 7e-41 44
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-40 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GPOL_c12770 YP_005281698.1 integrase core domain-containing protein VFG1602 Protein 6e-42 44