Gene Information

Name : EKO11_4730 (EKO11_4730)
Accession : YP_005280347.1
Strain :
Genome accession: NC_016904
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 70651 - 71211 bp
Length : 561 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: seh:SeHA_A0111 lytic transglycosylase PilT

DNA sequence : 
ATGTCCGGGGGTAAAGTGCCCCTCAGACTTATTTCATTAATCCTGCTTTGTTCTCTTATTTATCCCGCCCGAGCTTCATA
CATCGCCCCCAAACAAATCTGGACTAACAAGTGGGACAATTGCTTTGCCGCCGCCGGCGCACGCTATCAAATTGAACCAT
TATTGTTGAAGGCCATTTCTGCCGGGGAATCTTCATTGAAGCCGGGCGCAATTAACATAAATAAGGACAGAAAAACAGGC
AAAGCCAGTAGTACGGATTATGGGTTGATGCAAATAAACTCAACCCATATTCCAAAGCTTATAAAGATGGGCGTAATCAA
AAAGTCTGAGGATTTAATTACCAAACCATGTCTTAATATCCATATAGGAAGCTGGATACTGGCAAGACATTTTCAGATAT
GTGGCGTCAGCTGGAATTGCCTTGGATCATACAATGCCGGATTCCGTAAGGACAGACATGAAACAAGAGAGCAATATGCT
AATAAAGTATGGAGAATTTATCGTGACATGAAAGGGATATGCCTTCCCGGGCAGGGAGGCAGACAATGCAGACAATCGTA
G

Protein sequence : 
MSGGKVPLRLISLILLCSLIYPARASYIAPKQIWTNKWDNCFAAAGARYQIEPLLLKAISAGESSLKPGAININKDRKTG
KASSTDYGLMQINSTHIPKLIKMGVIKKSEDLITKPCLNIHIGSWILARHFQICGVSWNCLGSYNAGFRKDRHETREQYA
NKVWRIYRDMKGICLPGQGGRQCRQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pilT NP_458636.1 putative membrane protein Virulence SPI-7 Protein 2e-44 66
pilT NP_807847.1 hypothetical protein Virulence SPI-7 Protein 2e-44 66
pilT AAC98888.1 PilT Virulence SPI-7 Protein 1e-44 66
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-21 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 1e-21 42
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-21 41
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EKO11_4730 YP_005280347.1 lytic transglycosylase VFG0539 Protein 3e-22 42