Gene Information

Name : EKO11_4758 (EKO11_4758)
Accession : YP_005280371.1
Strain :
Genome accession: NC_016904
Putative virulence/resistance : Virulence
Product : P pili regulatory PapB protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 93824 - 94135 bp
Length : 312 bp
Strand : +
Note : PFAM: P pili regulatory PapB protein; KEGG: sec:SCV23 major pilu subunit operon regulatory protein PapB

DNA sequence : 
ATGGTTGGCCCGGAGATGGGAACGATTTGCTCTACTTTTGGTGAACGAACCACCTCCAACTTCAGGGCGAAAAATATGGC
ATTAATTCCCGGAAAAGTATCAGAGGATTTGTTCGATATATTAATTGAGTTATCAGCAATACATAGCAAGAAGATTATTA
ATGCATTGCGGGATTATCTTGTATCAGGCGAAACCAGAAAAACATCGTGTGAACGATACGGTGCCAGTGTCAGCTATTTT
AGCGTGGCCTTAGGACGTTTATTTCATGTCGCTCAGTTGGTTTCACAGTTGGTACCTTTATTATTACGATAA

Protein sequence : 
MVGPEMGTICSTFGERTTSNFRAKNMALIPGKVSEDLFDILIELSAIHSKKIINALRDYLVSGETRKTSCERYGASVSYF
SVALGRLFHVAQLVSQLVPLLLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaB CAC43422.1 SfaB protein Virulence PAI III 536 Protein 8e-15 45
papB AAZ04473.1 P pilus protein Virulence PAI I APEC-O1 Protein 1e-14 42
APECO1_3518 YP_854257.1 PapB-like protein Virulence PAI I APEC-O1 Protein 1e-14 42
papB YP_002414018.1 pap operon regulatory protein PapB Not tested Not named Protein 1e-14 42
prfB CAD42032.1 PrfB protein Virulence PAI II 536 Protein 8e-14 42
papB AAC61719.1 PapB Virulence PAI I CFT073 Protein 1e-14 42
papB AAL67418.1 PapB Virulence PAI II CFT073 Protein 1e-14 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EKO11_4758 YP_005280371.1 P pili regulatory PapB protein VFG0436 Protein 8e-17 54
EKO11_4758 YP_005280371.1 P pili regulatory PapB protein VFG0942 Protein 3e-12 50
EKO11_4758 YP_005280371.1 P pili regulatory PapB protein VFG1641 Protein 3e-15 45
EKO11_4758 YP_005280371.1 P pili regulatory PapB protein VFG1551 Protein 3e-14 42