Gene Information

Name : EKO11_0871 (EKO11_0871)
Accession : YP_005276582.1
Strain : Escherichia coli KO11FL
Genome accession: NC_016902
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 913892 - 914659 bp
Length : 768 bp
Strand : +
Note : KEGG: eoi:ECO111_3596 type III secretion protein EpaR; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein

DNA sequence :
ATGGGGGAGGCGATACTCTATCAGTTGCATAGTCTGCTGGCTGCTACAGCGCTCGGTTTTTGCCGATTGGCACCAACTTT
CTATTTGTTACCATTTTTCGCCAGTGGGAATATACCAACAGTAGTTCGTCACCCAATAATAATAGTGGTATCATGTGCAT
TAGTTCAGCATTACCACTATGAATTATTGAACTTAAATGAAATCGATATTGCTTTGTTCGCTGCCAGAGAAATTATCATA
GGGCTGTTTATTGCATGCTTATTAGCATCCCCGTTTTGGATTTTCCTTGCTATAGGTAGCTTTATCGATAACCAACGCGG
TGCAACATTAAGTAGTACTTTGGATCCGGCTACAGGTGTCGATACCTCGGAATTAGCAAGATTATTTAACCTTTTCTCTG
CTGCGGTTTATCTTACTAAAGGTGGAATGAACTTTATTCTGGAAACTCTTTGGCAAAGTTATAATTTATGGCCTTCAGGC
AATTTTAATTTTCCTAAATTAGAGCCTTTATTCTCATATATTAATAACATAATGACTCATACTATCGTTTACGCAAGCCC
CGTGATTGCCGTTATGCTGGGCGGTGAGGCTGTCCTGGGATTGCTGGCACGTTATGCTTCACAACTAAATGCTTTTGCCA
TTTCACTGACTATCAAAAGTGCGCTGGCATTTTTAATATTAATTATTTATTTTGCCCCAATACTGGCTGAACGAGTAATG
CCGTTATCCTTTTTCCCAGAACAATTGCAACTATACATTGAGAAATAG

Protein sequence :
MGEAILYQLHSLLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIALFAAREIII
GLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSG
NFNFPKLEPLFSYINNIMTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTIKSALAFLILIIYFAPILAERVM
PLSFFPEQLQLYIEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
epaR AAZ31291.1 EpaR Virulence ETT2 Protein 1e-81 97
spaR NP_457282.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 6e-40 46
spaR NP_806491.1 virulence-associated secretory protein Virulence SPI-1 Protein 6e-40 46
spaR NP_461809.1 needle complex export protein Virulence SPI-1 Protein 3e-40 46
spaR YP_217807.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 8e-39 45
spaR AAS66867.1 SpaR Not tested SSR-2 Protein 3e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EKO11_0871 YP_005276582.1 type III secretion protein SpaR/YscT/HrcT VFG0549 Protein 1e-40 46
EKO11_0871 YP_005276582.1 type III secretion protein SpaR/YscT/HrcT VFG1014 Protein 7e-36 43