Gene Information

Name : EKO11_4033 (EKO11_4033)
Accession : YP_005279666.1
Strain : Escherichia coli KO11FL
Genome accession: NC_016902
Putative virulence/resistance : Virulence
Product : GTP-binding protein HSR1-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4243851 - 4244864 bp
Length : 1014 bp
Strand : -
Note : PFAM: GTP-binding protein HSR1-related; KEGG: xbo:XBJ1_1847 putative CP4-6 prophage; GTP-binding factor

DNA sequence :
ATGGATGACCCGGTAAAGGGCGAAGGCCGGATGATTACTGATGCCAGTGGCGTCACCAGAAGGGAAGGCGGGATTTTGGG
AATGTGGAGCAATATATTTCCAGAACGTAATGGTAGCAACGAGCAAAAAGGTGATAGCAAGCCGCACATACCCGACATCA
GGGATATTCTTGATATTTTCCCTCAGCCACTGCGGGAAAAGCTGGTGAACAAAATCAGTAAAGCCATCGACTATGAACCC
GTGATTGGTGTCATGGGAAAAACAGGCGCGGGGAAAAGCAGCGTATGTAATGCGCTGTTTAAAGGGGAGGTTTGTGCAGT
TAGCGACGTTGAGGCATGTACTCGCGAAGTTCAGGAATTGCGTATACGCTTCGGCAAACACTCGCTGAAGATCATTGATA
TACCTGGTGTCGGTGAAAATGCCCGGCGGGATAAGGAGTATGAAGATTTATACCGCAATTTGCTTCCCTCCCTGGATCTT
ATCCTGTGGGTAATAAAAGGAGACGATCGGGCCTTTTCTGCGGATGAGCATTTCTACAACAATGTTCTGCTCTCTGCTGG
TGGGGGTGAGCGCGTTTTATTCGTCCTTAACCAGGTTGATAAAATTGAGCCATTCCGCGAGTGGGATACTCATCTGCATC
AGCCATCTCCTGCACAGCGCATCAACATCGAAAAGAAAGAAGCCTACATTACTGAACGATTTGGTTTTACGCACTATCCG
GTGACACCTGTCTCCGCCGATGAGGGCTACAACATTCTTCGTCTGGTAGAGACTATTATTCGGGCTTTGCCTGATCGGGC
TAAAAGTAGCACGGCTTCGCAGGTTAAGGATGAGTTCAAAACCGACGAAGTAAAGACGGAAGCAAAAAACGGCTTTGGCA
GCGTAATCTCCGGGATACTCGACGACGTTATTGATTCTTTTCCGTTACCAAAGCCTGTCAAAGAGCTTACCCGAAAGGGG
AAAGACAAACTTATCGAGTGGGCTGGTAATGCCTGGGACCATTTTTTTGGATAG

Protein sequence :
MDDPVKGEGRMITDASGVTRREGGILGMWSNIFPERNGSNEQKGDSKPHIPDIRDILDIFPQPLREKLVNKISKAIDYEP
VIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELRIRFGKHSLKIIDIPGVGENARRDKEYEDLYRNLLPSLDL
ILWVIKGDDRAFSADEHFYNNVLLSAGGGERVLFVLNQVDKIEPFREWDTHLHQPSPAQRINIEKKEAYITERFGFTHYP
VTPVSADEGYNILRLVETIIRALPDRAKSSTASQVKDEFKTDEVKTEAKNGFGSVISGILDDVIDSFPLPKPVKELTRKG
KDKLIEWAGNAWDHFFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 1e-48 45
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-48 44
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 4e-48 44
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 5e-48 44
Z1210 NP_286745.1 histone Not tested TAI Protein 9e-47 44
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 9e-47 44
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 3e-48 44
unnamed AAL99256.1 unknown Not tested LEE Protein 3e-48 44
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 5e-48 44
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 4e-48 44
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 4e-48 44
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 5e-47 44
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 1e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EKO11_4033 YP_005279666.1 GTP-binding protein HSR1-like protein VFG1062 Protein 1e-48 44
EKO11_4033 YP_005279666.1 GTP-binding protein HSR1-like protein VFG0654 Protein 2e-48 44
EKO11_4033 YP_005279666.1 GTP-binding protein HSR1-like protein VFG1674 Protein 3e-48 44