Gene Information

Name : Sbal678_0617 (Sbal678_0617)
Accession : YP_005271860.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : YD repeat protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 715788 - 718652 bp
Length : 2865 bp
Strand : +
Note : TIGRFAM: YD repeat protein; KEGG: ypi:YpsIP31758_1823 putative toxin protein

DNA sequence :
ATGAGCACATCGTTGTTCAGCAAAACCCCGACGGTCAAGGTCCTTGATAACCGCGGCCTGATCGTGCGCGATATCGCGTA
TCATCGCCATCCCGGCTCCCCGGACGTTACCAGTGAGCGCATTACACGCCATCAGTACGATGCCCGTGGCTTTCTGACGC
AGAGTGCTGACCCGCGCCTGCACGATGCCGGACTGGTGAATTTCACGTATCTTACGGGCCTGGCCGGCAACGTTCTGTGC
TCGCAGGGTGTGGATAACGGCATCACTGTGGTGCTGAACGACGCTGCAGGTCGACCTTTTATCGCAGTCAGCAATATCAG
CACTGCCAGTGATGGCACGGAGGACAGAAGTCAGGCGGTAACCCGCACCTGGCAGTATGAGGATGTAGAACTGCCTGGGC
GTCTGGTGAGCGTGACCGAGCAGGCCACCGGTGAAGCCGCCCGTGTCACGGAGCGCTTCATGTATGCTGCCAATACTGCC
GCAGAGAAGGCGCTGAACCTGGCCGGTGCGTGCGTCTGCCATTACGACACGGCAGGCCTGACCCAGACGGACAGCGTGGC
GCTGACCGGCGTGCCGCTCTCGGTTACCCGCCGCCTGCTGAAGGATGCGGAAAATCCCGATGTGGTGACCGACTGGCAGG
GCACCGACGCTTCTGCTTGGAACGACATGCTGGCTGGCGAAACGTACACCACCCTGACCACGGCTGACGCCACCGGCGCA
GTGTTGACCACCACCGACGCAAGAGGCAATACGCAGCGGGTGGCGTATGACGTGTCGGGCCTGCTGTCGGGCAGCTGGCT
GACGATGAAAGGTGGCACGGAGCAGGTTATCGTCGCCTCCCTAACGTACTCCGCCGCCGGGCAGAAGCTGCGCGAGGTAC
ACGGCAACGGCGTGGTGACCACGTATGAATACGAGCCAGAAACGCAGCGCCTGTCCTGGATTAAAACGGAACGTCCGGCC
GGACATGCCTCCGGGGCGAAGGTGCTGCAGGACCTGCGCTACGAGTACGACCCGGTGGGTAACGTGCTGAAAATCACCAA
TGATGCTGAAGCAACCCGTTTCTGGAGCAATCAGAAAGTGGTGCCGGAGAACACGTACGTCTACGACAGCCTGTACCAGC
TGGTCAGCGCAACCGGGCGCGAAATGGCAAATGCCGGACAGCAGGACAGCAATCTCCCCGCTGCCACCGTTCCCCTCACT
ACCGACAGCTCTGTGTTTACAAACTATACCCGCACTTACAGCTACGATAGCGCCGGCAACCTGACTCAAATCCGTCACAG
CGCGCCGGCGACAAACAACAGTTACACCACAAACATCACCGTCTCCGATAAAAGCAACCGGGGCGTGCTGAGTACGCTGA
CTGAAAACGCTTCAGACGTTGACGCGCTGTTTACGGCGGGTGGTCAGCAGAAACAGCTGCAGCCTGGACAGAGTCTGGTC
TGGACACCGCGTAACGAGCTGCTGAAGGTGACGCCGGTGGTGCGAGACGGCAGTACGGATGACCGGGAGAGCTACCGCTA
CGACGGTGGCAGTCAGCGCATCCTGAAGCTCAGCGTACAGAAAACCGGTAACAGCGCACAGACGCAGCGGGCGCTGTACC
TGCCGGGCCTGGAGCTGAGGAGCACAAAGTCCGGGGATAAGGAAACGGAAAGCCTGCAGGTTATCACTGTGGGTGAGGCG
GGCCGGGCGCAGGTGCGCTTGCTGCACTGGGAGAGCGGCAGACCGGCAGAAATCACCGGCGACCTTATACGTTACAGCTA
CGATAACCTGATAGGCAGCAGTCAGCTTGAGCTGGACGGCGATGGCAATATCATCAGCATGGAGGAGTATTATCCATACG
GGGGCACCGCGGTATGGGCAGCCCGCAGCGCGGTGGAAGCGAACTACAAAACCGTGCGGTACTCTGGCAAGGAGCGTGAT
GCGACGGGGTTGTATTACTACGGATATCGGTATTACCAGCCGTGGGCGGGTCGGTGGCTCTCCGCAGACCCGGCGGGCAC
CATTGATGGATTGAACCTGTTCAGGATGGTGCGGAATAATCCAATTACATTGCGAGATGATGACGGGTTAGAACCGAAAA
AGGCAGAGGATGGATATTATTACCATTTGACTAATGCCAGAAATTTAATGAGTATTGTAGAGAAGGGGTTTATTCCACAA
GGCTCTCAGGGACCTACGCTCTCAGCGGGGGATCTAGAGAACAGGAAAAAAGGGGTTATTAGATATATTTATACTAAGGT
GGCCACTGAACTTAACCGGGGGGAGATTAGCAAAAATAAAATTAGCAGCAATAATTTTAAGATGCCCTCTGATTTTTGGT
CTGAGTTTAAGTTAGAAGGTTCCAGCATTACTAATGACAATGATATAGAAAGTGTAAATAAGAAACTAAATGATTCTATT
GTGCGTGGCATTTCTGCTGTTCTTGATAAGGGCGAATTTAAAAAAAAGCATAATGAAAAAAAATCGGAAGATATTACAAG
ATCAAGAATGAGAGTTATGGATGATGATGAAATAAATAAAATTATCACACAAAAACCACTCCTGGAACAGCAGCGAGAGG
CCGCAAATACAAAGGGATATATTTACCTTGCCGCCACAAGGAATACACTTGAAAAATATGCAATTAATTACAAGTCATCC
AATGATGACATGATATTACTGGCAATTCCTGATAGTATATTTTCTGCGAAGATCTTAGAAGAAGACGAACAGGAACCAGA
CTGCGCAGTGAGGTACAGCGGGGGGGTATTATCAGCTGATCTGCGCTTTGTAAATCGGGAGGGACAAGTTGTACCTTTTG
AGTATTCAGCTAGCGGTGAAATAATACTAGATTATCCATCCGTTATAAACTTCATCCGAAAGTAA

Protein sequence :
MSTSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRLHDAGLVNFTYLTGLAGNVLC
SQGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAVTRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTA
AEKALNLAGACVCHYDTAGLTQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGA
VLTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVTTYEYEPETQRLSWIKTERPA
GHASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKVVPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLT
TDSSVFTNYTRTYSYDSAGNLTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLV
WTPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELRSTKSGDKETESLQVITVGEA
GRAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDGDGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERD
ATGLYYYGYRYYQPWAGRWLSADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQ
GSQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEGSSITNDNDIESVNKKLNDSI
VRGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINKIITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSS
NDDMILLAIPDSIFSAKILEEDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
TccC3 AAO17204.1 TccC3 Virulence tcd island Protein 0.0 63
TccC4 AAO17196.1 TccC4 Virulence tcd island Protein 0.0 61
TccC2 AAL18492.2 TccC2 Virulence tcd island Protein 5e-178 60
TccC5 AAO17210.1 TccC5 Virulence tcd island Protein 3e-174 59
tccC CAI77380.1 putative insecticidal toxin complex protein Not tested tc-PAIYe Protein 7e-136 52