Gene Information

Name : Sbal678_4485 (Sbal678_4485)
Accession : YP_005275660.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5206696 - 5208078 bp
Length : 1383 bp
Strand : -
Note : KEGG: shw:Sputw3181_0075 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA AT

DNA sequence : 
ATGAGCCAGATAGATAATAACCTCAAGCCTCTTCCATCGGCAGTATCGGTACTGATTGTTGATGATGAACCCGGAATGCG
CAGTTTTTTAAATAAGGCACTCTCGAAGAAATTCGCCTTAGTCGAAACAGCGGGCAGTATCGAAGATGCGGAGCAGCTAC
GTAGCCGCTGCCATTTCGATTTGCTGATCGTCGACATTCGCCTCCCTGGCCGCTCGGGTATCGAATGGCATGAAGCGTTG
GATGAGCAGGGTCGTCGTTCGGACATCATTTTTATGACCGGCTATGCTGACATGGAAGTGGCGATTACCGCGCTGCGCGC
GGGTGCGTCTGACTTCATCATGAAACCTTTCCACCTTGAGCAGATGATGACAGCGGTCGATCGTTGTATCGAACGCCGCC
TGCTCAAACGCGAAAACTTGATGCTGCGCCGTGAGGTTTCAATCGGTTACTCATCGACCATTATTGGCAGCAGTGAGGCC
ATGAAGTCGGTGAAACATATTATCGAACGTGTGGCGCCGACCAATGCGGTTGTGCTGATCCAAGGTGAGTCGGGTACGGG
TAAGGAATTAGTTGCACGCCAATTGCATTTGCTCAGTGGACGTCAGGGACCTTTTGTCCCAGTCAACTGTGGCTCTATCG
CTCCTGAATTGCTCGAAAGTGAACTGTTTGGTCATACCGCAGGTGCATTTACGGGGGCGAAAGGCAATCGTGAAGGTTTA
TTCAGTTTTGCCTCGGGCGGGACGATTTTCCTCGATGAAATTGGCGAAATGCCACTGAAAATGCAAACGGCATTGCTCAG
AGTATTAGAGCAAAAAGCGATTCGCCCAGTGGGCAGCGAGAAAGAAGTGAACATTGATGTGCGAGTGATCGCGGCCACCA
ACCGCACTCTGATTGATGAAGTGGATGCGGGGAATTTCCGCCGTGATTTATATTATCGACTGAATGTGCTCGATATTTTA
ATCCCGCCATTACGTGACAGACCCGAAGATGTGGTCGAGTTAACCCATCATTTCACCCGTCAACTCGCTGCCGAATTAGG
GGTTAGAGAAGTCGTGTGGAGCCATGAGGACATGGTGAAGTTGCAACAACACGAGTGGCCGGGCAATATTCGTGAGCTGC
GCAATATGATTGAGCGCTGTATTTTACTGGGTAAACCACCGGCGGAATATTGGAAACAACAACTAAAGAGTGAGTCTTTA
TCGACATCGGGCTATCCATTGGATTGGCCGTTAAAAGAAGTCGAAAAACACCATGTGACTAGCGTTGTGGACTTACATTC
TGGCAATAAGTCTGCCGCAGCGAGGGATTTAGGCGTTTCGCGTAAAACTTTAGATCGTAAGTATAAAGAGTGGTTTGATT
TCAGCGGCGATCAGGAGTCATAG

Protein sequence : 
MSQIDNNLKPLPSAVSVLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIEWHEAL
DEQGRRSDIIFMTGYADMEVAITALRAGASDFIMKPFHLEQMMTAVDRCIERRLLKRENLMLRREVSIGYSSTIIGSSEA
MKSVKHIIERVAPTNAVVLIQGESGTGKELVARQLHLLSGRQGPFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGL
FSFASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLIDEVDAGNFRRDLYYRLNVLDIL
IPPLRDRPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQHEWPGNIRELRNMIERCILLGKPPAEYWKQQLKSESL
STSGYPLDWPLKEVEKHHVTSVVDLHSGNKSAAARDLGVSRKTLDRKYKEWFDFSGDQES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_4485 YP_005275660.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0089 Protein 2e-67 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_4485 YP_005275660.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 1e-67 42