Gene Information

Name : Sbal678_0301 (Sbal678_0301)
Accession : YP_005271554.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 332623 - 333300 bp
Length : 678 bp
Strand : +
Note : KEGG: shw:Sputw3181_0251 two component transcriptional regulator; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein

DNA sequence : 
ATGAAAATACTTTTAGTTGAAGATGATGCGACGACGATTGATTACATCGTCAAAGGATTTCTTGAGCAGGGTCACAATAT
CGAAACGGCGAGCGATGGCCACCAAGGTTTGTCACTCGCCACGAGTAGTCAGTACGATCTCGTGATCCTCGACCGCATGT
TACCCCAGCTCGATGGCTTGAAATTATTGGCCGCCTTAAGGGCAACGGGCAATCAAACCCCAGTGCTGATTTTATCTGCC
TTAGCGCACGTTGATGAGCGAGTGAAAGGCTTGCGCGCGGGCGGCGACGACTATATGACTAAGCCGTTTGCCTTCTCTGA
GTTATTAGTGCGCGCCGAAAAACTCATGCACCGTGGTCAATCTGTGCCTGTCACCACAGATCTCGTTGTCGGTGGTTTGA
AGATGGAGTTACTGACCCGTAATGTGACCTTAGACGGGCAAGAGTTGTTGCTGCAGCCAAAAGAGTTCCAGTTACTTAAG
TATCTAATGGAACATGCGAATCAAGTGATTAGCCGCACCTTGTTGTTCGAAGCGGTGTGGGATTATCACTTCGACCCACG
CACGAACGTTATCGATGTGCATATCGCAAAATTACGCCGTAAGTTTGAAGAGTTAGGCCATGGCGAGCTTATCGAAACCG
TGAGGGGAGCGGGTTATCGCTTACGACAAAGGCATTAA

Protein sequence : 
MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQSVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLK
YLMEHANQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-43 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-43 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0083 Protein 1e-42 45
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0347 Protein 4e-45 44
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0197 Protein 5e-40 43
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0111 Protein 1e-47 43
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0638 Protein 1e-38 43
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0308 Protein 4e-43 42
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family BAC0125 Protein 2e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family VFG0596 Protein 6e-44 46
Sbal678_0301 YP_005271554.1 two component transcriptional regulator, winged helix family VFG1389 Protein 4e-36 43