Gene Information

Name : Sbal678_2288 (Sbal678_2288)
Accession : YP_005273495.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2661052 - 2661702 bp
Length : 651 bp
Strand : +
Note : KEGG: svo:SVI_2230 type III secretion system EscR protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGACCTTACTCGACCATCCAATCCAATTGATCATTATGTTGTTTTGCTTGTCACTGCTGCCGCTGTTCGCCGTGATGGG
CACTTCATTCTTGAAATTGGCAATTGTGTTCTCTATGTTACGTAATGCCTTAGGGATCCAGCAGATCCCACCCAATATGG
CAATTTACGGCCTCGCATTAATTCTCACTCTGTTCACCATGGCACCCGTGGGGATGGCAATCAATGACAATCTAAAAGCC
ACCCCTATAGTGTTCGATGCACCCAATGTATTTGAGCAAATCAACACTGAAGCCATAGCACCCTACCGCGCATTTCTCGA
AAAAAATACCAGCAATACTCAGATTGAATTTTTCGCCAATATTGGCCATAAGGTCTGGCCCGAAAAATACCAGCAAGTGC
TGACCAAAGACTCACTGTTAGTGATGGTGCCAGCCTTTACTATGAGTCAGCTCATAGAGGCATTTAAGATAGGTTTACTC
ATTTATCTTCCCTTTGTCGCAATTGACCTTATCGTCTCCAATATTTTACTGGCAATGGGCATGATGATGGTGTCCCCCAT
GACGATAGCCCTACCGTTCAAGTTGTTGATTTTTATCTTGATGGGTGGATGGGAAAAACTGATCAGTCAACTAATGATGT
CATTCTCATGA

Protein sequence : 
MTLLDHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKA
TPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLL
IYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-64 60
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-59 59
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-59 59
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-59 59
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-59 59
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-60 59
escR AAL57527.1 EscR Virulence LEE Protein 3e-57 57
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-57 57
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-57 57
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-56 57
escR AAC31528.1 L0049 Virulence LEE Protein 2e-57 57
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-57 57
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-57 57
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-57 57
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-57 57
escR AAC38369.1 EscR Virulence LEE Protein 2e-56 57
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-57 57
escR AAK26700.1 EscR Virulence LEE Protein 3e-57 57
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-56 57
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-54 56
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-53 53
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-53 53
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-39 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-37 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-37 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-40 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-40 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-40 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-40 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-40 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-40 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-34 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-34 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-36 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0519 Protein 3e-60 59
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0827 Protein 1e-57 57
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0715 Protein 8e-57 57
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0188 Protein 2e-56 56
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0394 Protein 3e-54 55
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG0044 Protein 3e-45 48
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG2131 Protein 1e-37 43
Sbal678_2288 YP_005273495.1 Yop virulence translocation R VFG2494 Protein 3e-32 42