Gene Information

Name : Sbal678_2264 (Sbal678_2264)
Accession : YP_005273471.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2638337 - 2638807 bp
Length : 471 bp
Strand : +
Note : TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; KEGG: svo:SVI_2254 type III secretion system chaperone, SycD family

DNA sequence : 
ATGAAACAGCAAGAATTTGAAGTACTTGAACACTTTCTGCAACGGGGCGGCTCATTGCGTATGTTGGCTGATGTCGAGCA
AAGTGACTTGAATGTGTTGTACCAATACGCGTTGCAGTTAATGGCTTGCCGTGATCAACAGGGGGCAAAGCGGATCTTTT
ACCTCTTGATGCGCATAGAACAATGGAATTACGACTATTGCTTTTCTCTAGGAATATGCTGCCAGCAGTTACACGAACAT
GAAGAGGCCATTTTCTGTTTGGGCCGGGCAGGGATGATCAAAGTCGATAATCCGTTACCCGCTTACCATGCTGGTTTGAG
CTACTTGGCGTTAGGTAACCATGATTATGCCAAGCGAAGCTTTAACGCCAGTCTACGTTGGTGTGAAGGCCACCCAGAGA
GCACTGGGATTGCCGCCAGTGCACAGCGCGGACTGGCCACACTCGCGAAGGAGAATTCCCATGTCAATTAA

Protein sequence : 
MKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIEQWNYDYCFSLGICCQQLHEH
EEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAASAQRGLATLAKENSHVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 2e-19 42
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 1e-19 42
sscA CAA12186.1 SscA Virulence SPI-2 Protein 1e-19 42
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 3e-19 42
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-19 41
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_2264 YP_005273471.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 6e-20 42