Gene Information

Name : Sbal678_2258 (Sbal678_2258)
Accession : YP_005273465.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : type III secretion outer membrane pore, YscC/HrcC family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2633501 - 2634976 bp
Length : 1476 bp
Strand : +
Note : KEGG: svo:SVI_2260 type III secretion system EscC protein, putative; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein

DNA sequence : 
ATGAAAAAACTACTCAGTTTACTATTACTGTGTCAGATGGGCCTAGCTCAGGCTGCACCACTGACAAACATTAAATGGCA
AGGTGAGCCCTTTGTCATGATCAGTCGAGGTACAGCGCTAACCTCAGTCATCCAGGACTTTGCCAGTAATTATGGCGTAC
CTGTCATTGTCAGTAATAAGGTCAACGACAACTATATTGGCCAAATCCAAGAACAAGATCCTAAATCCGTTATTCAAGAT
CTGACCCGTCGCTATGGCTTAGTTTGGTACTACAACAACGAAGTCTTATATGTTTACAAAGCCAGTGAAATTAATAGTGA
AGTGCTACCGTTAACTAGCTTATCCGCGACTAAGGTCGACCATTACCTGCGCAGTGCAGGAGTGTTAGATAAGGGGGTCT
GTAACATTAAATCTATGGCAGGGATCAGTGGCTTACAAGTCACAGGTGTACCCGAATGCATTAACAGTGTCACCAAACTT
ACGGCACAACTTGATGCCAATGCTAAACAAACCACAGAAAACCAAGAAACAGTTAAAGTCTATCCACTGAAATACGCATC
TGCCACAGACTCTATTTATGAATATCGTAGCCAACCTGTGAGTATTCCAGGATTAGTCACGGTGCTAAAAGAAATGGATC
AAGGTACACAAGTCGCCAATGCAGTGGCGGGTTCTGTGAGTAATATTAGCGGCCCAGTCTTTGCCGCTGATCCTCGTCAA
AACGCCATCATAGTCCGTGGAAGTGCCCGTGATATGGCCACTTATGGCTCTTTGATAAGACAACTCGATACTAAGCCCTC
CATGATTGAAGTGTCTGTATCGATATTCGATGTGGACGCCTCTGACTTTAAACAGTTGGGCATAGATTGGTCGGCGTCAG
CCAAATTAGGGGGCGGTTCAGTCAGTTTCAACAGTGGTGATAGCAGTGACAATTTTTCCACTGTCATAGGCAATACTGGC
AACTTCATGATGCGCCTCAATGCACTAGAGAAGAACTCTAAGGCCAAAGTGCTCTCACGTCCCTCTGTGGTTACGTTAAA
CAATGTGCAAGCAGTACTCGATAAAAACGTGACATTTTACACTAAGTTGGAAGGGGATAAAGTCGCTAAATTAGAGTCAG
TGACCACTGGTTCTCTATTACGAGTCACACCAAGATTGATTGATGAAGTAGGTCATCAGGCTGTGATGTTGGATCTCAAT
ATTCAGGATGGTCAACAGAGCCAAGCAGTGAGCCGTAGTGAACCATTACCACAAGTGCAAAACTCCGAGATCTCGACTCA
GGCGACGCTGAAATCGGGGGAGAGTCTGTTACTCGGCGGCTTCGTACAAGATAGAGATGAAACGACCCAGAACAAGATCC
CGTTACTAGGCGATCTACCATTACTGGGCGGTTTGTTTAGAAGCACAGATCACCACACTCAAAGCGTGATGCGTCTGTTC
CTGATCAAAGCGGAACCCGTTAACCAAGGAGATTAA

Protein sequence : 
MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNKVNDNYIGQIQEQDPKSVIQD
LTRRYGLVWYYNNEVLYVYKASEINSEVLPLTSLSATKVDHYLRSAGVLDKGVCNIKSMAGISGLQVTGVPECINSVTKL
TAQLDANAKQTTENQETVKVYPLKYASATDSIYEYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ
NAIIVRGSARDMATYGSLIRQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSGDSSDNFSTVIGNTG
NFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLN
IQDGQQSQAVSRSEPLPQVQNSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF
LIKAEPVNQGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 8e-123 55
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 3e-105 49
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 3e-105 49
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 4e-105 49
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 5e-105 49
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 3e-105 49
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 7e-105 46
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 7e-105 46
unnamed AAL06362.1 EscC Virulence LEE Protein 1e-104 45
escC CAC81855.1 EscC protein Virulence LEE II Protein 2e-104 45
escC CAI43881.1 EscC protein Virulence LEE Protein 2e-104 45
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 4e-103 45
escC NP_290275.1 hypothetical protein Virulence LEE Protein 1e-103 45
escC AAC38377.1 EscC Virulence LEE Protein 7e-103 45
ECs4575 NP_312602.1 EscC Virulence LEE Protein 1e-103 45
escC AAC31520.1 L0041 Virulence LEE Protein 9e-104 45
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 2e-104 45
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 9e-104 45
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 2e-104 45
escC AAK26708.1 EscC Virulence LEE Protein 2e-104 45
escC AAL57535.1 EscC Virulence LEE Protein 2e-104 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_2258 YP_005273465.1 type III secretion outer membrane pore, YscC/HrcC family VFG0495 Protein 2e-105 49
Sbal678_2258 YP_005273465.1 type III secretion outer membrane pore, YscC/HrcC family VFG0723 Protein 4e-103 45
Sbal678_2258 YP_005273465.1 type III secretion outer membrane pore, YscC/HrcC family VFG0819 Protein 5e-104 45