Gene Information

Name : Sbal678_1150 (Sbal678_1150)
Accession : YP_005272380.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1321977 - 1324550 bp
Length : 2574 bp
Strand : +
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: shw:Sputw3181_3141 ATPase; SMART: AAA ATPase

DNA sequence :
ATGCGACTCGATCGTATGACCAATAAATTTCAGCTTGCCATCTCAGATGCCCAGTCTCTCGCACTTGGGCGTGATCATCA
GTTTATTGAACCGCTGCATTTGATGATGGCATTGTTGAACCAAGATTCAGGTTCAATCCATCCCTTATTGACCCAAGCTG
GCATTCGCGTGAGTGCGCTGCGCTCGCTTTTGAGTCAAGAGCTGGAACGCTTACCTCAAGTCGAAGGTACGGGCGGCGAT
GTGCAATTATCCCAAGGTTTAATACGTTTATTAAATCTGTGCGATAAATTGGCGCAAAAGCGTAAAGACAAATATATCTC
TAGCGAGTTATTTGTATTAGCTGCGTTAGAAGGAGGCGATGCCCTCGCGCAAGCGTTGAAAAAAGCCGGCGCGACTAAAG
AGTTGATGGAGCAAACCATTGAACAAATGCGCGGCGGCCAAAAAGTGGATGATCCGAACGCTGAAGATCAACGTCAAGCG
TTGAAGAAATTTACTATCGATCTGACCGAGCGAGCCGAACAAGGCAAGTTAGATCCTGTGATCGGCCGTGACGATGAAAT
TCGCCGCACGATCCAAGTATTACAACGTCGCAGTAAAAACAACCCCGTCCTTATCGGTGAACCGGGTGTGGGTAAAACTG
CAATTGTTGAAGGACTTGCCCAACGTATCGTTAATGGTGAAGTCCCCGAGGGGATTAAAAATAAGCGCGTTTTATCCCTC
GACATGGGCTCATTGATTGCGGGCGCTAAATATCGCGGTGAGTTCGAAGAACGTTTAAAAGCGGTATTGAATGAGTTAGC
GCAGGAAGAAGGTCAAGTGATCCTCTTCATCGACGAGCTGCATACTATGGTCGGCGCCGGTAAAGGTGAAGGCGCAATGG
ATGCGGGTAACATGCTGAAACCTGCGTTAGCGCGTGGTGATTTGCACTGTGTGGGCGCTACCACGCTTGATGAGTATCGT
CAGTACATTGAAAAAGATGCGGCGCTTGAACGTCGTTTCCAAAAAGTGCTGGTGGATGAGCCAAGTGTTGAAGACACCAT
CGCCATTTTGCGTGGCCTGAAAGAACGTTACGAGCTGCATCACCATGTGGAAATTACCGATCCGGCGATTGTGGCGGCGG
CGACTATGTCGCACCGTTATGTGTCGGACCGTAAGTTGCCCGATAAAGCGATCGATTTGATCGACGAAGCGGCATCGAGC
ATTCGCATGCAGATGGACTCAAAACCTGAGTCACTCGACCGGCTCGAACGTCGTGCTATCCAGCTCAAACTGGAGGAGCA
AGCCTTAGCCAAAGAAAATGATGAGGCGAGCCGTCGCAGGCTTGACCATCTGCAAGAGGAATTACGAGACGTTGAAGCTA
AAGCTTCAGAGTTGAACGAAATCTGGCGTACTGAAAAAGCCGCACTAGCGGGAACTCAGCACATTAAAGCCGATCTCGAA
CAGGCTCGAATGGACTTAGAAGTGGCGCGTCGTGCGGGTGATTTAACTCGGATGTCTGAGCTGCAATACGGTCGTATTCC
TGAGCTTGAAAAACAGCTCGATTTGGCATCGCAAGCCGAAATGCAGGACATGACGTTATTGCGTAACAAGGTCACTGAGT
TCGAAATCGCCGAAGTCTTGTCGAAAGCGACGGGAATTCCCGTATCGAAAATGCTTGAAGGCGAGCGCGAAAAATTACTG
CAAATGGAAGTGGCGCTGCACGAGCGGGTGATAGGCCAAAACGAAGCCGTTGATGCGGTCGCGAATGCGATTCGTCGTAG
CCGCGCGGGTCTAGCGGATCCAAATCGCCCGATTGGCTCGTTCTTGTTCTTAGGCCCAACCGGTGTGGGTAAAACTGAGC
TATGTAAATCACTGGCGAGGTTCTTATTCGATACCGAATCGGCCTTAGTGCGCATTGATATGTCTGAGTTTATGGAGAAA
CACTCAGTATCGCGTTTAGTGGGTGCGCCTCCTGGATACGTAGGTTATGAAGAGGGCGGTTACTTAACGGAAGCCGTTCG
TCGTAAACCGTATTCGGTGATATTGCTCGACGAAGTCGAGAAAGCGCATCCCGATGTGTTTAACATCTTACTGCAAGTGC
TGGATGATGGACGCTTAACCGATGGTCAAGGTCGTACTGTAGATTTTAGAAATACAGTGATCATCATGACCTCGAACTTA
GGCTCCGACATTATCCAAGAAGGATTTGGTCAAGTGACCTATGCAGAGATGAAAGCGGCGGTAATGAATGTGGTCACTCA
CAGTTTCAGACCCGAGTTTTTAAACCGTATCGATGAATCTGTGGTGTTCCATCCATTGGATGCTGCCAATATCAAGCGTA
TTGCTTCGATACAGATTGCTTCCTTACGCCAACGTTTGGCGGAGAAGGACTATACATTGGAGATCACCGACGACGCATTA
TCATTGATTGCGGAAATTGGTTTCGATCCTGTGTATGGCGCAAGACCGTTGAAACGGGCATTGCAGCAAGAAGTCGAAAA
CCCGCTGGCGCAGAAATTACTGCGTGGCGACTTGTTACCGGGTAAACCGATCAAGGTCAGCTGTGCGGGTGGCGAGTTAG
TGTTCGAGCAATAA

Protein sequence :
MRLDRMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSALRSLLSQELERLPQVEGTGGD
VQLSQGLIRLLNLCDKLAQKRKDKYISSELFVLAALEGGDALAQALKKAGATKELMEQTIEQMRGGQKVDDPNAEDQRQA
LKKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGIKNKRVLSL
DMGSLIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKGEGAMDAGNMLKPALARGDLHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELHHHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASS
IRMQMDSKPESLDRLERRAIQLKLEEQALAKENDEASRRRLDHLQEELRDVEAKASELNEIWRTEKAALAGTQHIKADLE
QARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQDMTLLRNKVTEFEIAEVLSKATGIPVSKMLEGEREKLL
QMEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLARFLFDTESALVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL
GSDIIQEGFGQVTYAEMKAAVMNVVTHSFRPEFLNRIDESVVFHPLDAANIKRIASIQIASLRQRLAEKDYTLEITDDAL
SLIAEIGFDPVYGARPLKRALQQEVENPLAQKLLRGDLLPGKPIKVSCAGGELVFEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-156 45
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-99 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-99 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_1150 YP_005272380.1 ATP-dependent chaperone ClpB VFG0079 Protein 4e-131 41
Sbal678_1150 YP_005272380.1 ATP-dependent chaperone ClpB VFG2076 Protein 3e-106 41