|
Name : clpB (NOCYR_5248) Accession : YP_005266628.1 Strain : Nocardia cyriacigeorgica GUH-2 Genome accession: NC_016887 Putative virulence/resistance : Virulence Product : protein disaggregation chaperone Function : - COG functional category : - COG ID : - EC number : - Position : 5834576 - 5837131 bp Length : 2556 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17259993; Product type f : factor DNA sequence : GTGGACTCGTTCAATCCCACCACCAAGACCCAAGCGGCGCTGACCGCTGCCTTGCAGGCGGCCTCGGCCGCGGGCAACCC GGAGATTCGTCCGGCGCACTTGCTGGTGGCGTTGCTGGATCAGACCGACGGCATCGCCGCCCCCTTGCTGAAGGCCGTCG GTACGGATCCGGCGGTCGTACGACGCGAGGCGCAAGAGATCATCGACCGGTTGCCCAGCGCGACCGGCGCCACCACCACC CCCCAGCTCGGCCGCGAAGCGCTGGCCGCGATCACCGCGGCGCAGCGGCTGGCCACCGAGATGGGCGATGAGTACGTGTC CACCGAGCACGTCATGGTCGGCCTGGCCGAAGGCGACTCCGACATCACCATGCTGCTCACCAAATACGGCGCCACCGCCG ACGCCCTGCGCGCGGCGTTCACCGCCGTGCGCGGCAGCGCCCGGGTCACCAACCCGGATCCCGAAGGCAGCTACCAGGCG CTGGAGAAGTACTCCACCGACCTCACCGAGGCCGCCCGCTCCGGCAAGCTCGACCCGGTGATCGGCCGCGATACCGAGAT CCGGCGCGTGGTGCAGGTGCTGTCGCGGCGCACCAAGAACAACCCGGTGCTGATCGGTGAGCCAGGCGTCGGTAAGACCG CCATCGTCGAGGGGCTGGCCCAGCGCATCGTCGCGGGTGACGTCCCCGAATCGCTGCGCGGCAAGTCGGTCATCTCGCTC GATATGGGTGCCATGGTGGCCGGTGCGAAGTACCGCGGTGAATTCGAGGAGCGGCTCAAGGCCGTGCTCGAAGACATCAA GAACAGCGCCGGGCAGATCATCACCTTCATCGACGAGCTGCACACCATCGTCGGTGCGGGCGCCACCGGTGAATCGGCGA TGGACGCGGGCAACATGATCAAGCCGATGCTGGCCCGCGGCGAGCTGCGCCTGGTCGGCGCCACCACGCTGGAGGAGTAC CGCCAGCACATCGAGAAGGACGCCGCGCTCGAGCGCCGGTTCCAGCAGGTGCTCGTCGGTGAGCCCTCGGTCGAGGACAC CGTCGGCATCCTGCGCGGCATCAAGGAGCGCTACGAGGTGCACCACGGTGTGCGCATCACCGACTCCGCGCTGGTCGCCG CGGCCACCCTGTCCGACCGCTACATCACCTCCCGGTTCCTGCCGGACAAGGCGATCGACCTGGTCGACGAATCGGCCTCG CGGCTGCGCATGGAGATCGACTCGCGGCCGGTGGAGATCGACGAGGTCGAACGCGCGGTGCGCAGGCTAGAGATCGAAGA GGTCGCCCTCGCCAAGGAAACCGACGAGGCGTCCAAACAACGGCTGGAGAAGCTGCGCTCGGAACTGGCCGACGACCGGG AAAAGCTCAACCAGCTCACCACCCGCTGGCAGAACGAGAAGAACGCCATCGACCAGGTCCGCGCGCTCAAGGAGGAACTG GAATCGCTGCGCGGGGCCTCCGAACGGGCCGAACGCGACGGCGATCTCGGCAAGGCCGCCGAACTGCGCTACGGCAAGAT CCCCACGCTGGAAAAGCAGCTCGCCGAGGCCGAGAAGGCGTCCGCGTCGGCCGGTGACGGCGAGGTGATGCTGAAGGAAG AGGTCGGGCCCGACGATATCGCCGAGGTGGTGTCGTCGTGGACCGGTATTCCGGTGGGCCGCATGCTCGAGGGCGAGACT CAGAAGTTGCTGCGCATGGAGTCCGAACTCGGGCGGCGCGTGGTCGGCCAGGACGAGGCCGTGCGGGCGGTGTCGGATGC GGTGCGCCGGGCGCGGGCCGGTGTCGCCGACCCGAACCGGCCGACCGGCTCGTTCATGTTCGTCGGCCCCACCGGCGTCG GTAAGACCGAGCTGGCCAAGGCGCTGGCCGACTTCCTCTTCGACGACGAACGCGCCATGGTCCGCATCGACATGAGCGAG TACAGCGAGAAGCATTCGGTGGCCCGGTTGGTCGGCGCGCCGCCCGGATACGTCGGCTACGACCAGGGCGGTCAGCTCAC CGAGGCGGTGCGGCGCAGGCCCTACACCGTGGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGATGTGTTCGACATCC TGCTCGCCGTCCTCGACGAGGGCAGGTTGACCGACGGCCAGGGCCGCACCGTCGATTTCCGCAACACCATCCTCATCCTC ACCTCCAACCTGGGTGCGGGTGGCGACAAGGACTTCGTGATGAACGCCGTGCGCTCGGCCTTCAAACCGGAGTTCCTCAA CCGGCTCGACGACGTCGTGATGTTCCATTCGCTCAACGAGGAACAGCTCGAGTCCATCGTCGACATCCAGCTCGACCAGC TGCAGAAGCGGCTGTCGCAGCGCAGGCTGACGCTGGACGTCAGCGGTTCGGCGCGGTTCTGGCTGGCGGTGCGCGGCTAC GACCCGGTCTACGGTGCGCGGCCACTGCGCAGGCTGATCCAGCAGGCCATCGGCGACACCCTCGCCAAGGAACTGCTCGC CGGCGAGATCACCGACGGCGACACCGTCAAGGTCGGCGTCAGTCCCGATGGTGACGGGCTCGTCGTCGGCAGGTGA Protein sequence : MDSFNPTTKTQAALTAALQAASAAGNPEIRPAHLLVALLDQTDGIAAPLLKAVGTDPAVVRREAQEIIDRLPSATGATTT PQLGREALAAITAAQRLATEMGDEYVSTEHVMVGLAEGDSDITMLLTKYGATADALRAAFTAVRGSARVTNPDPEGSYQA LEKYSTDLTEAARSGKLDPVIGRDTEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRGKSVISL DMGAMVAGAKYRGEFEERLKAVLEDIKNSAGQIITFIDELHTIVGAGATGESAMDAGNMIKPMLARGELRLVGATTLEEY RQHIEKDAALERRFQQVLVGEPSVEDTVGILRGIKERYEVHHGVRITDSALVAAATLSDRYITSRFLPDKAIDLVDESAS RLRMEIDSRPVEIDEVERAVRRLEIEEVALAKETDEASKQRLEKLRSELADDREKLNQLTTRWQNEKNAIDQVRALKEEL ESLRGASERAERDGDLGKAAELRYGKIPTLEKQLAEAEKASASAGDGEVMLKEEVGPDDIAEVVSSWTGIPVGRMLEGET QKLLRMESELGRRVVGQDEAVRAVSDAVRRARAGVADPNRPTGSFMFVGPTGVGKTELAKALADFLFDDERAMVRIDMSE YSEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTVVLFDEIEKAHPDVFDILLAVLDEGRLTDGQGRTVDFRNTILIL TSNLGAGGDKDFVMNAVRSAFKPEFLNRLDDVVMFHSLNEEQLESIVDIQLDQLQKRLSQRRLTLDVSGSARFWLAVRGY DPVYGARPLRRLIQQAIGDTLAKELLAGEITDGDTVKVGVSPDGDGLVVGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-101 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_005266628.1 | protein disaggregation chaperone | VFG2076 | Protein | 5e-117 | 44 |
| clpB | YP_005266628.1 | protein disaggregation chaperone | VFG2084 | Protein | 2e-112 | 42 |
