Gene Information

Name : NOCYR_2579 (NOCYR_2579)
Accession : YP_005263985.1
Strain : Nocardia cyriacigeorgica GUH-2
Genome accession: NC_016887
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2854305 - 2856128 bp
Length : 1824 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence : 
GTGGACGAGGCGGGGCAGGAGCCGCAGCAGGCCGACCACGCGGACGCGGTGCCACCGGGCAGCGCGCTCTTCCGGGTGAC
CGAGCCGGTCCGCGGGCGGCTCATGGCCGCGCTCGCCGTCGCCGCGCTCGGCGGCGCGGCGGGGGTCGCCGGCTTCGTCG
GCCTGGCGCTGGCACTGCGGGAACTGCTGGCCGCGGACACCGCGAGCGACGCGGTCGTGGCCTATCTCGTGATCGCCGCT
GCGGGGTTCCTCGCCCGATTCGCGTTGCGCGCCTGGTCTTTCCTGCTCTCGCACCTGGCATCGTTCGATCTCGAGCAGCG
CCTGCGCCGCGATCTTGCCGCGCATCTGGCCCGGGTCCCGCTGGGGGAGGCGCAGCGGCTGGGCTCGGGCGCGGTGAAGA
AGATCGTCCAGGACGATGTGCGCGGGCTGCACATGGCAGTGGCCGACGCCGTGCCGCTCGCCGGTTTCACGCTGGCGCAG
CCCATCGCGGCATTGATCGCCCTGGGATTCGTGGACTGGCGGCTGCTGCTGGCGGTCGTGCTGGTGCTGCCGGTGGTGTT
CATCGGGATGCAGCTGAGCCTGCGCGATTACGTCGAGACCCGGCGCCGCTACGACGAGGCCAACGAAGCGATCAACGCCG
CGACGGTCGAGTTAGTGCAGGGCATGCCGGTGGTGCGGACCTTCGACGACGGCACCGCCTCCTTCCGCCGGTTCGTCGAC
CGGGTCCGGCAGTTCAACGTCGCTACGACCAACTGGCAGAACAACAATCGCGCCGCGATGATCTTCGCCAACCTGACCGT
CGCGCCGCTGCCCACCATCGTCATCGTGACCGCGGTCGGCATCTGGCTGACCTCCGCCGGATCGATGTCGCCCGCCTCGC
TCATCGCCGCCATCCTCATCGGCACCCTGCCGGTGGAGTCGGTGGTGCCGCTGATGAACCTGTCGAACCTGATCAACGAC
TCCAAGGCCGGTGCGGCGCGGATCGCCGAACTGCTCGATATCGCGCCGCTGCCTGAGCCGCAGCATCCGCAGGCCCCGGC
CGACGGGTCGATCGAATTCCGCTCCGTCCGCTTCGGCTACACGGGCGCGGACCGGGCCGCCCTCGACGGTGTCGATCTGA
CGGTGCCGAGCGGGACGGTGTGCGCCCTGGTCGGGCCGTCCGGGTCCGGGAAATCGACGGTCGCACGGCTGATTCCGCGG
TTCTGGGACGTCGATTCCGGTCAGGTCCTCGTCGGCGGCGTCGATGTGCGCCAGATCGGGTCCGAGGATCTGCTGCGGCA
CCTGGCGATGGTCTTCCAGGACCCGTTCCTGCTGTCCGACACCGTGGCCGCCAACATCCGGCTCGGCCGGCCTTCGGCCA
CCGACGCCGAGGTCGAGGCCGCTGCGCGGGCCGCGCGGGCACACGATTTCATCGTCTCGGAACTGCCGCACGGCTACGAC
ACCCCGGTGGGCGAGCGCGGGGCACGGCTCTCCGGCGGCCAGCGGCAGCGGATCACCATCGCGCGGGCCCTGCTGACGGA
CGCGCCGATCGTCATCCTCGACGAAGCGACCTCGTTCGCCGACCCGGAGAACGAGGCCGCCATCCAGGACGCCATCGCCG
AACTCACCCGCGGCCGCACCGTGCTCGTGGTCGCGCACCGGCTGTCGACGATCGTCGACGCCGATCAGATCGTGGTGCTC
GAATCCGGTCGCGTGGCCGAAACCGGCACGCACACCGAACTCGTCGCGTCCGGCGGCACCTATGCCCGGCTCTGGGAGCA
CCACCAGCGCGCCAGGGGCTGGGGCCTCGGCGCGGGCACCATCGAGGAGGTCATGAACCGATGA

Protein sequence : 
MDEAGQEPQQADHADAVPPGSALFRVTEPVRGRLMAALAVAALGGAAGVAGFVGLALALRELLAADTASDAVVAYLVIAA
AGFLARFALRAWSFLLSHLASFDLEQRLRRDLAAHLARVPLGEAQRLGSGAVKKIVQDDVRGLHMAVADAVPLAGFTLAQ
PIAALIALGFVDWRLLLAVVLVLPVVFIGMQLSLRDYVETRRRYDEANEAINAATVELVQGMPVVRTFDDGTASFRRFVD
RVRQFNVATTNWQNNNRAAMIFANLTVAPLPTIVIVTAVGIWLTSAGSMSPASLIAAILIGTLPVESVVPLMNLSNLIND
SKAGAARIAELLDIAPLPEPQHPQAPADGSIEFRSVRFGYTGADRAALDGVDLTVPSGTVCALVGPSGSGKSTVARLIPR
FWDVDSGQVLVGGVDVRQIGSEDLLRHLAMVFQDPFLLSDTVAANIRLGRPSATDAEVEAAARAARAHDFIVSELPHGYD
TPVGERGARLSGGQRQRITIARALLTDAPIVILDEATSFADPENEAAIQDAIAELTRGRTVLVVAHRLSTIVDADQIVVL
ESGRVAETGTHTELVASGGTYARLWEHHQRARGWGLGAGTIEEVMNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 9e-91 47
ybtP CAA21388.1 - Virulence HPI Protein 9e-91 47
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 5e-91 47
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 1e-90 46
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 1e-90 46
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 2e-90 46
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 3e-90 46
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 2e-90 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NOCYR_2579 YP_005263985.1 ABC transporter ATP-binding protein BAC0432 Protein 4e-91 47