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Name : clpC (NOCYR_2248) Accession : YP_005263661.1 Strain : Nocardia cyriacigeorgica GUH-2 Genome accession: NC_016887 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit clpC Function : - COG functional category : - COG ID : - EC number : - Position : 2489042 - 2491501 bp Length : 2460 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14640692; Product type f : factor DNA sequence : ATGACCGAGTCCTGGCCCAGTTCGATGAGCTCCTTCGACGACATCTTCCAGCGCTTCTTCGGACCCGGAATGTCGGCGCG GCCGCCGGTGCAGCGCACCGACCTGGGCCGGCTGCTCAGCGATAACGCCAAACAACTCGTCGCCACCGCACAAGCCGCGG CCAAGGACTGGCGCAGCCCCGAACTCACCACCGAACACCTGCTCTACGCCGCCACCCTGGTCGAACCCACGCGCGGCATC CTCACCGAAATCGGCCACGACCCCGACGAGCTGAGCATGAAGATGCGCGACGCGGTCTCCGGGCTCAGCGGCAATGGCAA CGGCAACGGCGGCGCCATCGCCCTCAGCCCCGCGGCCAAACGCGCCATGCGCAACGCCCAGCGCAGCGCCGCCGAAGCCG GCAGCAGCTACATCGGCCCCGAACACATCCTGCTCGGCATCGCCGAAACCGAGACACCCGCTGCGCAGGCCATGGCGGGC GCGCAACTGCCGGGCACCGACGGCCAGCGCAAGACCAGCGACACTCCCACCCTCGACGAATACGGCCGCGACCTGACCGC CGAGGCCCGCGCGGGCAAGGTGGACCCGGTGGTCGGGCGCGCCGAGGAGATCGAGCAGACCGTCGAGATCCTGTCGCGGC GGCGCAAGAACAACCCGGTGCTCATCGGCGATCCCGGCGTCGGTAAGACCGCCATCGTGGAGGGGCTGGCCCAGCGCATC GTCAACGGGGATGTGCCGAGCACGCTCGCCGACCGTCGTGTGGTAGCCCTCGATGTCGGTTCCCTGGTCGCGGGCAGCAA GTACCGGGGCGAATTCGAGGAACGGCTGACCAAGATCCTCGACGAGGTGCGCGCCCACTCCGACGAACTGGTGGTCTTCA TCGACGAACTACACACCATCGTCGGCGCGGGCAGTGGCTCGGAGGGTTCGATGGACGCGGGCAATCTGCTCAAACCGGCG CTCGCGCGCGGTGAACTGCACGCCATCGGCGCCACCACCATCGACGAATACCGGCGTCACATCGAAAAGGACGCCGCCCT GGAACGCCGCTTCCAGCCGGTGATGGTGTCCGAACCGTCGGTCGCCGACACCATCGAGATCCTGCGCGGACTCGCCGACG TCTACGAAGAACACCACCAGGTGCACTACACCGACGAGTCGCTGATCGCCGCCGCGGAACTGTCCGACCGCTACCTCACC GACCGATTCATGCCCGACAAGGCCATCGACATGATCGATCAGGCAGGCGCGCGGGTGCGCCTGCGGACCCGCACTCCGGA CCCCGACATGCGCGAACGCGAGGAAGAGGTGGCCCGGCTGCGCCGGGAGAAGGACGCCGCCGTCGCCGCCGAAGACTACG AGAAGGCCAAGGAACTCAAATCCGAGATCGCCGTCGCCGAAGAGCAGCTCGCCGGCGCCGGGCAGACCGAGGCGCCGCAG GTCACCGTCACCGATATCGCGGAGGTCATCTCCCGCCAGACAGGTATCCCGGTATCGGAGTTGACCACCGAAGAACGCCA GCGGCTGCTCGGGCTCGAGGATGTGCTGCACAAGCGGGTGATCGGCCAGGACGAGGCGATCGTCGCGGTGGCCGAAGCGG TGCGGCGGGCGCGGGCCGGACTCAAGGATCCGAATCGGCCCATCGGCTCGTTCCTGTTCCTCGGACCCACCGGCGTCGGC AAGACCGAGCTGGCCAAAGCGCTGGCCGAGGCCGTCTTCGGTGACGAGGACCGGCTCATCCGCTTCGATATGAGCGAATT CCAGGAAAAGCACACCGTCTCCCGGCTGGTCGGCGCCCCGCCCGGATATGTCGGCTACGACGACGCCGCTCAGCTCACCG ACAAGGTTCGCCGCCAGCCCTATTCGGTGATCCTGTTCGACGAGATCGAGAAGGCGCATCCGGATGTGTTCAATGTGCTG CTGCAATTGCTCGACGACGGCCGGGTCACCGATTCCAAGGGCCGCACGGTGGACTTCAAGAACACCATCGTCATCATGAC CAGCAATATCGGCTCCGATCTGATCCTGTCCGCGCCCGACGGCGATCTGGATTCCATCACACCGACGCTGAACGAGCGCC TGCGCTCGCATTTCCGCCCCGAATTCCTCAACCGCATCGACGACACCATCGTCTTCCACCGGCTCGACCAGGCGCAGATC CACCGCATCGTCGACCTGGTGCTCGACGGCACCCGCAGGCTGCTGCACGCCCAGGACATCGACCTCGACGTCACCGATCC GGCGGTGGACTGGCTCGCCGAACACGGCTACCAACCCGAATTCGGCGCCCGCCCGCTGCGGCGCACGGTGCAGAAAGAGG TGGACAACAAGCTGTCGCGGCTGCTGCTCGACGGTGATCTGAAATCCGGCGATACCGTGCGGCTGGACGCCGACGGTGGT GGGTTGCAGTTGGCGGCCGTGGAGCGTCGTGGGGCGAAAACGGTAGAAGCGGCACCGTAA Protein sequence : MTESWPSSMSSFDDIFQRFFGPGMSARPPVQRTDLGRLLSDNAKQLVATAQAAAKDWRSPELTTEHLLYAATLVEPTRGI LTEIGHDPDELSMKMRDAVSGLSGNGNGNGGAIALSPAAKRAMRNAQRSAAEAGSSYIGPEHILLGIAETETPAAQAMAG AQLPGTDGQRKTSDTPTLDEYGRDLTAEARAGKVDPVVGRAEEIEQTVEILSRRRKNNPVLIGDPGVGKTAIVEGLAQRI VNGDVPSTLADRRVVALDVGSLVAGSKYRGEFEERLTKILDEVRAHSDELVVFIDELHTIVGAGSGSEGSMDAGNLLKPA LARGELHAIGATTIDEYRRHIEKDAALERRFQPVMVSEPSVADTIEILRGLADVYEEHHQVHYTDESLIAAAELSDRYLT DRFMPDKAIDMIDQAGARVRLRTRTPDPDMREREEEVARLRREKDAAVAAEDYEKAKELKSEIAVAEEQLAGAGQTEAPQ VTVTDIAEVISRQTGIPVSELTTEERQRLLGLEDVLHKRVIGQDEAIVAVAEAVRRARAGLKDPNRPIGSFLFLGPTGVG KTELAKALAEAVFGDEDRLIRFDMSEFQEKHTVSRLVGAPPGYVGYDDAAQLTDKVRRQPYSVILFDEIEKAHPDVFNVL LQLLDDGRVTDSKGRTVDFKNTIVIMTSNIGSDLILSAPDGDLDSITPTLNERLRSHFRPEFLNRIDDTIVFHRLDQAQI HRIVDLVLDGTRRLLHAQDIDLDVTDPAVDWLAEHGYQPEFGARPLRRTVQKEVDNKLSRLLLDGDLKSGDTVRLDADGG GLQLAAVERRGAKTVEAAP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-170 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_005263661.1 | ATP-dependent Clp protease ATP-binding subunit clpC | VFG0079 | Protein | 9e-180 | 52 |
| clpC | YP_005263661.1 | ATP-dependent Clp protease ATP-binding subunit clpC | VFG0080 | Protein | 8e-150 | 50 |
