Gene Information

Name : czcR (NOCYR_1636)
Accession : YP_005263065.1
Strain : Nocardia cyriacigeorgica GUH-2
Genome accession: NC_016887
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1823389 - 1824066 bp
Length : 678 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type r : regulator

DNA sequence : 
ATGCGTCTGCTGATCGTGGAGGACGAGAAACGTCTCGCCCTCGCACTGGCAAAGGGCTTGTCCGCCGAGGGGTTCGCCGT
CGACGTGGTGCACGACGGTGCCGAAGGGCTGCACCGGGCCACCACCGCCGACTACGACCTGATCATCCTCGATATCATGC
TGCCCGGGATGAACGGTTACCAGGTGTGCGCCGCGCTGCGGGCCGCCGGTCACGAGACACCGGTGCTGATGCTCACCGCC
AAAGACGGCGAGTACGACGAGGCCGAGGGCCTGGACACCGGCGCCGACGACTATCTCAGCAAGCCGTTTTCCTATGTGGT
GCTGGTCGCGCGGATCCGGGCGCTGCTGCGCAGACGGACCCGCGCCGGCGCCCAGCTGCTGCGCGTCGGCGAGCTCGTCC
TGGACCCCGCCACCCGGCTGTGCCGCCGTGGTGACCAGGAAGTCTCGCTCACCGCCAAAGAGTTCGCGGTGCTGGAACAC
CTGGCCGTGCGCGCCGGTGAGGTGGTGTCGAAAGCCGATATCCTCGAACATGTCTGGGACTTCGCCTACGACGGCGACCC
CAACATTGTCGAGGTGTACATCAGCGCCCTGCGCCGCAAGATCGACACCCCGTTCGCCTGCCGCACCATCCTCACCGTCC
GCGGCGCCGGCTACCGATTGACGGCCGAACGTGGGTGA

Protein sequence : 
MRLLIVEDEKRLALALAKGLSAEGFAVDVVHDGAEGLHRATTADYDLIILDIMLPGMNGYQVCAALRAAGHETPVLMLTA
KDGEYDEAEGLDTGADDYLSKPFSYVVLVARIRALLRRRTRAGAQLLRVGELVLDPATRLCRRGDQEVSLTAKEFAVLEH
LAVRAGEVVSKADILEHVWDFAYDGDPNIVEVYISALRRKIDTPFACRTILTVRGAGYRLTAERG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-36 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_005263065.1 transcriptional regulator BAC0197 Protein 1e-40 50
czcR YP_005263065.1 transcriptional regulator BAC0125 Protein 5e-41 49
czcR YP_005263065.1 transcriptional regulator BAC0308 Protein 3e-40 47
czcR YP_005263065.1 transcriptional regulator BAC0083 Protein 3e-39 45
czcR YP_005263065.1 transcriptional regulator Y16952.3.orf35.gene. Protein 1e-23 43
czcR YP_005263065.1 transcriptional regulator BAC0111 Protein 5e-39 43
czcR YP_005263065.1 transcriptional regulator BAC0638 Protein 4e-33 43
czcR YP_005263065.1 transcriptional regulator U82965.2.orf14.gene. Protein 9e-26 43
czcR YP_005263065.1 transcriptional regulator BAC0347 Protein 6e-32 41
czcR YP_005263065.1 transcriptional regulator AE000516.2.gene3505. Protein 8e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_005263065.1 transcriptional regulator VFG0596 Protein 6e-38 47
czcR YP_005263065.1 transcriptional regulator VFG1390 Protein 8e-39 43
czcR YP_005263065.1 transcriptional regulator VFG1386 Protein 9e-34 43