Gene Information

Name : NOCYR_1003 (NOCYR_1003)
Accession : YP_005262453.1
Strain : Nocardia cyriacigeorgica GUH-2
Genome accession: NC_016887
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1132093 - 1132830 bp
Length : 738 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type e : enzyme

DNA sequence : 
ATGAGCGATCAACCAGCGATCGAGGTCCGCGACGTCACCGTCCATTACGGTTCGGTGCTCGCGCTCGACGCCGTCGACCT
GACCGTCGAATCCGGACGGGTGTGCGGGCTCATCGGCATGAACGGCTCCGGTAAATCGACGCTGTTCAAGACGATCATGG
GGCTGGTCACCCCCGACCGCGGCACCGTACGGATCGGTGGCGGCACACCGGCTGCGGCCCGGAAGGCAGGGGTGGTCGGC
TATGTACCGCAGAGCGAGGACGTCGACTGGTCGTTCCCGCTGTCGGTACGCGATGTGGTGACCACCGGCCGCTACGGACG
GATGGGATTCACCCGCCGGGCCCGGCGCAGCGATCGCGACGCGGTCGACCATGCGCTCGAGCGGGTCGAACTCACCGATC
TCGCCGACCGGCAGATCGGCCAGCTGTCCGGCGGCCAGCGCAAACGCGCGTTCGTCGCTCGCGGGATCGCCCAGGGCGCC
ACCGCGCTGCTGCTGGACGAACCTTTCGCCGGCGTCGACAAGCGGTCCGAAGCCACCATCACCGGGCTACTGCGGGAACT
GGCGGCCGACGGGGCGACGGTGCTGGTGTCGACGCACGACCTGCATGCCTTGCCCGGGCTCGCCGACGAAGCGGTGCTGC
TCATGCGCAAGGTCTTGATGCACGGCGACCCGGATGAGGCGCTGCGCCCCGAAAGCCTCGCCCTCGCTTTCGGTCTCGAC
GTCATGGGGCAACGGTGA

Protein sequence : 
MSDQPAIEVRDVTVHYGSVLALDAVDLTVESGRVCGLIGMNGSGKSTLFKTIMGLVTPDRGTVRIGGGTPAAARKAGVVG
YVPQSEDVDWSFPLSVRDVVTTGRYGRMGFTRRARRSDRDAVDHALERVELTDLADRQIGQLSGGQRKRAFVARGIAQGA
TALLLDEPFAGVDKRSEATITGLLRELAADGATVLVSTHDLHALPGLADEAVLLMRKVLMHGDPDEALRPESLALAFGLD
VMGQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-46 49
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-46 49
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-45 48
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-45 48
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-45 48
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-17 42
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-17 42
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 2e-17 42
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NOCYR_1003 YP_005262453.1 metal ion ABC transporter ATP-binding protein BAC0350 Protein 1e-45 48
NOCYR_1003 YP_005262453.1 metal ion ABC transporter ATP-binding protein BAC0440 Protein 2e-50 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NOCYR_1003 YP_005262453.1 metal ion ABC transporter ATP-binding protein VFG0526 Protein 1e-45 48