Gene Information

Name : NOCYR_1002 (NOCYR_1002)
Accession : YP_005262452.1
Strain : Nocardia cyriacigeorgica GUH-2
Genome accession: NC_016887
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter substrate-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1131209 - 1132096 bp
Length : 888 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence : 
TTGGTCGCGGCCTGTGCGGTGGCAGTGGGGGCTACCGGGTGCGGTGCGATCGAGGCCGATGACGGGAAGCCGACGGTACT
GACGACCTTCACCGTGCTCGCCGATATCGCGGCGAACGTGGCGGGCGAACATCTGACCGTCGAGTCGATCACCAAGCCGG
GGGCCGAGGTACACGGTTACGAGCCGACGCCGGGCGATATCAAGAAAGCCGCCAAGGCGGATCTGATCCTCGACAACGGG
ATGAACCTGGAAGCATGGTTCGGGCAGTTCGTCGAGGACTCCGAGGCCGCGCACGTGACCGTCAGTGACGGTGTCGCGCC
GATGAGCATCACCGAGGACGCCTACCAGGGCAAGCCCAATCCACACGCCTGGATGTCGCCGCTGAACGTGCGCACCTACG
TCGACAATATGGTCACCGCGTTCAGTGAACTCGACCCCGGCCACGCCGCCGACTTCCGCGCCAACGGCGACAAGTACAAG
GCCGAGCTGCAGCGGGTCAACGACGAGCTCGTGGCCGAGTTGAGTGTGCTGCCCCAGCACCAGCGGGCCCTGGTCACCTG
CGAGGGCGCGTTCTCCTACCTCGCCCGTGACGCCGGCCTCACCGAGAAATACATCTGGCCGGTCAACGCCGAACAACAGG
CCACACCGCAGCAGATCACCTCGGCGATCGAATTCGTCCGCGCCAACCAGGTGCCCGCGGTGTTCTGCGAATCGACCGTC
TCCGACGCGCCGATGCGCCGCGTCGTCGAGGCCACCGGCGCCAGCTTCGGCGGCGTGCTGTACGTGGACTCGCTGTCCGC
ACCGGACGGCCCGGTCCCGACCTATCTCGAGCTCATCCGCCACGACGCCGACCTGATCGGCGCGGCACTGACCGGGAGCA
AGCCATGA

Protein sequence : 
MVAACAVAVGATGCGAIEADDGKPTVLTTFTVLADIAANVAGEHLTVESITKPGAEVHGYEPTPGDIKKAAKADLILDNG
MNLEAWFGQFVEDSEAAHVTVSDGVAPMSITEDAYQGKPNPHAWMSPLNVRTYVDNMVTAFSELDPGHAADFRANGDKYK
AELQRVNDELVAELSVLPQHQRALVTCEGAFSYLARDAGLTEKYIWPVNAEQQATPQQITSAIEFVRANQVPAVFCESTV
SDAPMRRVVEATGASFGGVLYVDSLSAPDGPVPTYLELIRHDADLIGAALTGSKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-72 55
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-72 55
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-72 55
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-72 55
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-72 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NOCYR_1002 YP_005262452.1 metal ion ABC transporter substrate-binding protein BAC0349 Protein 2e-72 55
NOCYR_1002 YP_005262452.1 metal ion ABC transporter substrate-binding protein BAC0439 Protein 4e-65 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NOCYR_1002 YP_005262452.1 metal ion ABC transporter substrate-binding protein VFG0525 Protein 1e-72 55