Gene Information

Name : pefB (STMUK_p098)
Accession : YP_005255121.1
Strain :
Genome accession: NC_016864
Putative virulence/resistance : Virulence
Product : plasmid-encoded fimbriae;regulation
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 90004 - 90306 bp
Length : 303 bp
Strand : -
Note : -

DNA sequence :

ATGATGCTGAACAGAAAAGATGCTGATTATTATTTGGGCAAAGAAATCATGCTGGCCAGAATAAGAAGAGGGGCGCTGAT
ACCTGCAAAAGTAAATGAGGAACATTTCTGGTTACTCATCGGTATATCATCCATTCACAGTGAGAAGATTATTCAGGCAC
TCAGGGACTACCTTGTTTTTGGTGTGTCCAGAAAGGATGTCTGTGAACGCTATGAAGTGAACAACGGGTATTTCAGTACC
AGCCTGAACCGCCTGTCACGCATCAGTCAGGCCGCTGCGCAGATGGTTGTTTATTATTCATAA

Protein sequence :

MMLNRKDADYYLGKEIMLARIRRGALIPAKVNEEHFWLLIGISSIHSEKIIQALRDYLVFGVSRKDVCERYEVNNGYFST
SLNRLSRISQAAAQMVVYYS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
papB	AAC61719.1	PapB	Virulence	PAI I CFT073	Protein	6e-21	55
papB	AAL67418.1	PapB	Virulence	PAI II CFT073	Protein	6e-21	55
papB	AAZ04473.1	P pilus protein	Virulence	PAI I APEC-O1	Protein	6e-21	55
APECO1_3518	YP_854257.1	PapB-like protein	Virulence	PAI I APEC-O1	Protein	9e-21	55
papB	YP_002414018.1	pap operon regulatory protein PapB	Not tested	Not named	Protein	9e-21	55
sfaB	CAC43422.1	SfaB protein	Virulence	PAI III 536	Protein	2e-21	54
prfB	CAD42032.1	PrfB protein	Virulence	PAI II 536	Protein	5e-20	53
pixB	CAE85162.1	PixB protein	Not tested	PAI V 536	Protein	2e-12	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
pefB	YP_005255121.1	plasmid-encoded fimbriae;regulation	VFG0436	Protein	1e-42	100
pefB	YP_005255121.1	plasmid-encoded fimbriae;regulation	VFG1641	Protein	7e-22	54
pefB	YP_005255121.1	plasmid-encoded fimbriae;regulation	VFG1551	Protein	2e-20	53
pefB	YP_005255121.1	plasmid-encoded fimbriae;regulation	VFG0942	Protein	3e-18	49