Gene Information

Name : xerD (STMUK_3032)
Accession : YP_005253528.1
Strain : Salmonella enterica UK-1
Genome accession: NC_016863
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3171169 - 3172065 bp
Length : 897 bp
Strand : -
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence :
ATGGAACAGGATTTAGCGCGTATTGAGCAGTTTCTGGATGCCCTGTGGCTGGAACGAAATCTGGCGGAAAATACATTAAG
CGCGTATCGTCGCGATTTATCGATGGTCGTTGCGTGGTTGCATCATCGCGGAAAAACGCTTGCGACGGCGCAGGCTGATG
ATTTACAAACGCTATTGGCTGAACGTGTGGAGGGCGGATACAAAGCGACCAGCTCCGCACGCCTGTTAAGCGCTATGCGG
CGCTTTTTCCAGCATCTGTACCGTGAAAAGTATCGTGAGGATGATCCGAGCGCGCAGTTGGCCTCGCCTAAGCTTCCGCA
GCGTTTACCGAAAGATCTTAGCGAGGCGCAGGTTGAACGGCTCTTGCAGGCGCCGCTTATTGATCAACCTTTGGAGCTGC
GCGATAAAGCTATGTTGGAAGTGCTGTATGCCACCGGTTTGCGCGTGTCGGAACTGGTGGGGCTGACAATGAGCGATATC
AGTCTGCGGCAGGGCGTGGTGCGGGTTATCGGTAAAGGCAATAAAGAGCGGTTGGTGCCGTTAGGTGAAGAGGCGGTATA
TTGGCTGGAAACGTATCTGGAGCATGGGCGTCCATGGTTACTCAATGGCGTATCGATTGACGTATTATTCCCCAGCCAGC
GTGCGCAGCAGATGACGCGGCAGACCTTCTGGCACCGTATTAAACATTATGCGGTACTGGCTGGAATCGATAGCGAAAAA
CTATCGCCGCATGTTTTACGTCACGCTTTCGCCACGCATTTGCTGAATCACGGCGCCGACTTGCGCGTTGTACAAATGCT
ACTTGGGCATAGCGATCTTTCGACGACACAAATTTATACGCATGTCGCAACGGAGCGTTTGCGTCAACTTCATCAACAGC
ACCATCCGCGGGCATGA

Protein sequence :
MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSAMR
RFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK
LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 6e-62 54
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 6e-62 54