Gene Information

Name : stfD (STMUK_0199)
Accession : YP_005250766.1
Strain : Salmonella enterica UK-1
Genome accession: NC_016863
Putative virulence/resistance : Virulence
Product : putative periplasmic fimbrial chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 233972 - 234724 bp
Length : 753 bp
Strand : +
Note : periplasmic fimbrial chaperone StfD (gi|3747031)

DNA sequence : 
ATGATGTCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGTAGCGCCCAGGCCGCCAT
CGCGCCCGATCGCACCCGCCTGGTGTTTCGCGGCGAAGATAAATCGATAAGCGTCGATCTGAAAAACGCCAACAGCAAAC
TGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCGCCTTTAATCGTCGTCCCACCGGTC
CAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGCGTCGCTCCCCCAGGATCGGGA
AACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGCTGCAAATCGCCCTGCAAACGC
GCATCAAAGTTTTTTACCGCCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCCTGGCAATACAAGATCACCCTTCAG
CGTCAGGGCAATGGCTATCAGGTGAGCAACACAACCGGCTACTACGTGGTGTTAAGCAACGCCAGCAACCGCATGGACGG
CACACCAGCCAGAGGCTTTAGCCCTTTAGTGATTGCACCAAAAAGCAACGTGACGCTGGGAGGGGACGCCAGTGAATTAG
GTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTTAACTGTACTGACAACAGTTGT
GCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA

Protein sequence : 
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV
QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ
RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
AVDEAKSRKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 2e-47 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 3e-47 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 3e-47 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-47 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 4e-47 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 4e-47 44
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 5e-48 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
stfD YP_005250766.1 putative periplasmic fimbrial chaperone VFG1547 Protein 9e-48 44
stfD YP_005250766.1 putative periplasmic fimbrial chaperone VFG0896 Protein 2e-47 44
stfD YP_005250766.1 putative periplasmic fimbrial chaperone VFG0885 Protein 8e-43 43