|
Name : STMDT12_C46160 (STMDT12_C46160) Accession : YP_005250312.1 Strain : Salmonella enterica T000240 Genome accession: NC_016860 Putative virulence/resistance : Virulence Product : putative DNA helicase Function : - COG functional category : - COG ID : - EC number : - Position : 4829345 - 4832860 bp Length : 3516 bp Strand : + Note : COG1112 Superfamily I DNA and RNA helicases and helicase subunits DNA sequence : ATGGATGACAATGCTTTAGGGTTTGCCTCATACTGGCGCAATTCGCTGGCAGATGCTGAGTCAGGAAAGGGCAGTTTTGA ACGCAAAGACGCCAAAAATTTCACCCACTGGCATGGGATAGCGGCGGGACGTCTTGACGAAACGATCGTTGGTAAATTTT TTGAGGGAGAAAAAGACGACGTCGAAACAGTCGATGTCATCTTGCGGCCAAAGGTTTATTTCCGGTTACTGCAGCGTGGA AAGGACCATTCCGCTGGTGCGCCTGATATTGTTACCCCGATAGTGACGCCAGCCCTATTGAGCCGTGAAGGTTTTTTATA TCCGACGCCAGCGACCTCCATTCCCAGAGACCTGCTTGAACCTTTGCCAAAAGGGGCATTTTCAATTGGTGAGATTGAGC AGTACGACAAATACAAAACGACACATACGTCATTCTCTATCAACTTTGATGACCGCGTTGATAAGACCGCCGAAACAGAT GAAGAACGAGAAGCACGATATGCAGCCTGGCAGCAGGATTGGCGTCAATATCTGGATGATTCAGAAAGGCTGCTGAAGAA CGTTGTCGGCGACTGGATTAAAAATCCTGAGCAATATGAACTCGCTGAGCACGGTTATATTGTTAAAACGGCGCAATCTG GCGGCGCCAGTTTCCATATCCTTTCACTTTATGATCACCTGCTTGTTTGCAAAAAGGATGTGCCGCTCTTCAATCGTTTC GCCTCGCGAGAGGTTCATGCTGCAGAGTCATTACTTCCTCCGGAAGCAAAATTCAGCGACAGGATTGGACACTCCGGGGA TAAGTTTCCGCTGGCAAAGGCTCAGCGCGATGCCTTAAGCCATTTTCTGGATGCGAGGCATGGCGATATCCTTGCCGTTA ATGGTCCCCCGGGAACCGGAAAAACCACGCTGGTGCTTTCTATCATCGCCACGCAGTGGGCCCGAGCGGCTCTCGAAAAA GCGGAACCTCCGGTTATTATCGCGACTTCAACGAATAACCAAGCTGTAACGAACATTATCGAGGCGTTCGGGAAAGATTT TTCCCAAGGCACTGGTGCAATGGCCGGACGATGGTTGCCGGAGCTGAAAAGCTTCGGCGCTTATTTTCCCTCAAGCACTC GTAAAGCCGAGGCCGCCAAAAAATATCAAACTGAAGATTTCTTCAACCAGGTTGAGTCAAAAGAGTATGTAGAGGATGCA CTGCTGTTTTATCTGGAGAAAGCTAAGGCAGCCTTTCCTGAAAAAGAGTGTTCATCCCCTGAAAAGGTTATTGAACTCCT GCATGGTCAGTTGGCAGCAAAATCCGAGCAACTGGTAAGACTGAACGCAACATGGCAAACGTTAAGCCAGGTTCGGGCAA CGCGAGAGCTTATTGATAACGACATTGAGCAATATCTCGATAATTTAAATAAATTACTCTCCGGGCAAGAACAAAAAGTT ACTCAACTAAAAAGTGCTAAAGCGGAATGGAAAAAATATCGGGCCAGTGAATCACTGATCTATCCATTATTTTCATGGCT ACCAGTGGTTCGCAGTAAGCGGCAGTACCAAATACAACTGTTTCTCGAAGATAAATTAGGTGCGCTGATTGCGGGAAATC AATGGTCGGATCCTGAAACCATCGAACGTAATATCGATAGGTTGCTTAATTCCGCCGAGCGCGAGCAAACAACCTACCGG CAGCAGATTGACTCCGCGCATGAAATCGTTCTTAAAGAACAGCAGGCGGCTCAGGAATGGCAGAGGCTGGCACTTGATTT AGGGCATGAGGGCGACGAGGAACTGAGCTTCTCACAGGCAGATGAGCTGGCTGATACGCAGATTCGCTTCCCTGCATTCT TACTGACGACCCACTACTGGGAAGGTCGTTGGTTGATGGATATGGCCGGCATTGATGATCTGCAGAAAGAAAAGGGCAAG AAAGGTGCTAAAGGGGTAACAGCTCGCTGGCAACGCCGAATGAAACTTACCCCATGCGTGGTCATGACCTGCTATATGCT GCCCGGCAATATGCAGATAAGTGAACATAAAGGGCAGCGTAAATTCGAGAAAAGCTATTTATATGACTTCGCCGATTTAC TCATTGTCGATGAAGCTGGGCAGGTGCTTCCTGAAGTGGCTGCTGCCTCGTTTGCCTTAGCTAAAAAGGCATTAGTGATT GGTGATACGGAACAGATCCCGCCAATATGGAGTATTACTCCTGCTATTGATATAGGTAACATGCTGGCGGAAAAAATTCT GTCAGGCAGTACGCAAGAGGAGATTACTGAGAAATATACGGCAATCGCAGAGCTTGGTAAAAGCGCCGCATCTGGCAGCG TCATGAAAATAGCGCAGTGTGCCTCACGCTATCAATATGATCCCGAACTGGCTCGTGGAATGTACTTATATGAACACCGC CGGTGCTTCGATAATATTATTGGATACTGCAATACGCTCTGCTATCACGGTAAGTTGTTGCCTAAAAGAGGGTGTGAAGA GAGCAATTTAATGCCAGCAATGGGTTATCTCCATATTGATGGTAAAGGAGAGCTGGCAAGTAGCGGAAGTCGATATAATT TGCTGGAGGCTGAAACGATAGCGGCCTGGCTGACAGATAACCAGCAAAGTATTGAAGCGCATTATGGTAAATCGCTTCAT GAAGTTGTCGGTATCGTGACGCCTTTTAGTGCGCAGGTACCGACCATCAAACAGGCGCTGGATAAACAAGGCATCAGCGC AGGCACCAATGAAACGTCGCTCACGGTGGGCACAGTCCATTCTCTTCAGGGCGCTGAAAGAGCGATTGTTATATTCTCGC CAGTCTATTCAAAGCATGAAGACGGCGCGTTTATTGATAGCGATAACAGCATGCTGAATGTTGCTGTCTCCCGAGCTAAG GACAGTTTCCTGGTCTTCGGCGATATGGACCTGTTTGAGATTCAGCCAGCCTCATCTCCGCGGGGATTACTGGCAAAATA TCTCTTTGAGTCAGAGAAGAATGCGCTCACTTTTGATTATAAAGAGCGTAAGGATTTAAAAACTGCCGAGACCAAAATCT ACACACTCCATGGTGTGGAGCAGCATGATAATTTCCTGAATCAGACGTTTGAAAATACCGATAAACACATCACGATAGTT TCTCCATGGCTAACCTGGCAAAAACTGGAGCAAACCGGTTTTCTTGATTCCATGATTACGGCGTGTTCACGTGGTATTAA CGTCACGGTAGTCACTGACAGAAGCTACAACACTGAACATAATGATTTTGAGAAGCGAAAAGAGAAGCAGCAGAACCTTA AAGCGGCGCTGGAGAAACTGAACGCCCTTGGTATTGCGACAAAACTGGTCAATCGTGTTCATAGCAAAATTGTTATTGGT GATGATGGTTTGCTGTGCGTGGGATCGTTCAACTGGTTTAGCGCGACACGTGAAGCGCGATATGAACGATACGATACATC GATGGTTTATTGCGGTGATAACCTGAAGGGTGAGATTGAGGCTATTTATAATAGTCTTGATAGGCGTCAGGTTTAG Protein sequence : MDDNALGFASYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGRLDETIVGKFFEGEKDDVETVDVILRPKVYFRLLQRG KDHSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLEPLPKGAFSIGEIEQYDKYKTTHTSFSINFDDRVDKTAETD EEREARYAAWQQDWRQYLDDSERLLKNVVGDWIKNPEQYELAEHGYIVKTAQSGGASFHILSLYDHLLVCKKDVPLFNRF ASREVHAAESLLPPEAKFSDRIGHSGDKFPLAKAQRDALSHFLDARHGDILAVNGPPGTGKTTLVLSIIATQWARAALEK AEPPVIIATSTNNQAVTNIIEAFGKDFSQGTGAMAGRWLPELKSFGAYFPSSTRKAEAAKKYQTEDFFNQVESKEYVEDA LLFYLEKAKAAFPEKECSSPEKVIELLHGQLAAKSEQLVRLNATWQTLSQVRATRELIDNDIEQYLDNLNKLLSGQEQKV TQLKSAKAEWKKYRASESLIYPLFSWLPVVRSKRQYQIQLFLEDKLGALIAGNQWSDPETIERNIDRLLNSAEREQTTYR QQIDSAHEIVLKEQQAAQEWQRLALDLGHEGDEELSFSQADELADTQIRFPAFLLTTHYWEGRWLMDMAGIDDLQKEKGK KGAKGVTARWQRRMKLTPCVVMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFALAKKALVI GDTEQIPPIWSITPAIDIGNMLAEKILSGSTQEEITEKYTAIAELGKSAASGSVMKIAQCASRYQYDPELARGMYLYEHR RCFDNIIGYCNTLCYHGKLLPKRGCEESNLMPAMGYLHIDGKGELASSGSRYNLLEAETIAAWLTDNQQSIEAHYGKSLH EVVGIVTPFSAQVPTIKQALDKQGISAGTNETSLTVGTVHSLQGAERAIVIFSPVYSKHEDGAFIDSDNSMLNVAVSRAK DSFLVFGDMDLFEIQPASSPRGLLAKYLFESEKNALTFDYKERKDLKTAETKIYTLHGVEQHDNFLNQTFENTDKHITIV SPWLTWQKLEQTGFLDSMITACSRGINVTVVTDRSYNTEHNDFEKRKEKQQNLKAALEKLNALGIATKLVNRVHSKIVIG DDGLLCVGSFNWFSATREARYERYDTSMVYCGDNLKGEIEAIYNSLDRRQV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF_2 | AAZ04413.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 96 |
| APECO1_3532 | YP_854230.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 96 |
| S3169 | NP_838460.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 95 |
| SF2965 | NP_708739.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 95 |
| unnamed | CAD42018.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 0.0 | 95 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STMDT12_C46160 | YP_005250312.1 | putative DNA helicase | VFG0627 | Protein | 0.0 | 95 |
| STMDT12_C46160 | YP_005250312.1 | putative DNA helicase | VFG1537 | Protein | 0.0 | 95 |
