|
Name : STMDT12_C43940 (STMDT12_C43940) Accession : YP_005250090.1 Strain : Salmonella enterica T000240 Genome accession: NC_016860 Putative virulence/resistance : Virulence Product : ABC transporter permease Function : - COG functional category : - COG ID : - EC number : - Position : 4585346 - 4586272 bp Length : 927 bp Strand : + Note : COG1538 Outer membrane protein DNA sequence : GTGACAACCTATTACAACATCAGTAAATATCGTGAAATGATTGATGGCGTAAATCTGGAGAAAGAGTTTTATAAAAAGAT GCTGGAAACTTTTTCGTTGCTGGTATCTTCCGGTGTAGCTATGCAATCTGATATGCGTAAAGTACAAGTATCTATCGATG CATTAAATACCAGAAGCATTATGTATCAGTCGATGTTGGATGATGAAATGTATAAAATGCAGAATATGACTGGTCTGAAT TTATCGCCAGTTCAGATTCAAAGCGATGAAAAATTCAACCTCTTCAAAAAATATATCTTTGTCGAAAGCCCTGAAAAACT TATGGACATGGTGATGAAATACAACGATGACTATAAGATGCTTGTCAATACCCGAAAAGCCGCGACCGAAGATATTAATG CCGCAAAATCATCCTATTTTCCGACTGTAGATCTTGTTTCCAGCTATGTACAGAATAACCCGAGCGGTAGTGCCAAAAAA AGTGATTATGAAGATGAATTTAAAACGGGTATCAATGTCAGTTTCAACATTTTTAATGGGTTCAGAAATTCAGCCCAGGA AAGAAAAATGGTGGCAAGTTACTCGCAGGCTAAGCTGCAAATTGACGATTTTTTGATTAAAACGCGTTATAACATTGATT CACAACTTTCAAGATACGCCGCTGCAAAAGAGACTTACTCAGTGGCGGAACGTTCACATACAAACGCGTTACAGCTTACT GAATTATATGAGCAGGAGTTTCAGTTAGGGCAAAAAAGTTTGCTTGATTTAATTTCAAGCCGTAATGAAGCATTTCAGGC ATATGTAAGCATGATCGACAGCAAATATAGCCTGTATATTTTAAAGCTACAGCAACTCTCATTGATTTTTCATTTAATGG ATTATTTAAAAGGAAATACTGAAAGTGAGTTAAATGTAATGAAATGA Protein sequence : MTTYYNISKYREMIDGVNLEKEFYKKMLETFSLLVSSGVAMQSDMRKVQVSIDALNTRSIMYQSMLDDEMYKMQNMTGLN LSPVQIQSDEKFNLFKKYIFVESPEKLMDMVMKYNDDYKMLVNTRKAATEDINAAKSSYFPTVDLVSSYVQNNPSGSAKK SDYEDEFKTGINVSFNIFNGFRNSAQERKMVASYSQAKLQIDDFLIKTRYNIDSQLSRYAAAKETYSVAERSHTNALQLT ELYEQEFQLGQKSLLDLISSRNEAFQAYVSMIDSKYSLYILKLQQLSLIFHLMDYLKGNTESELNVMK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SC4138 | YP_219125.1 | ABC transporter outer membrane protein | Not tested | SPI-4 | Protein | 5e-139 | 99 |
| STM4259 | NP_463124.1 | ABC exporter outer membrane component | Not tested | SPI-4 | Protein | 5e-139 | 99 |
| spi4_C | AAC26641.1 | ABC exporter outer membrane component homolog | Virulence | SPI-4 | Protein | 6e-139 | 99 |
| siiC | CAE11795.1 | putative type-I secretion protein, putative outer membrane component | Virulence | SPI-4 | Protein | 4e-139 | 99 |
| STY4456 | NP_458556.1 | putative type-I secretion protein | Not tested | SPI-4 | Protein | 3e-134 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STMDT12_C43940 | YP_005250090.1 | ABC transporter permease | VFG0579 | Protein | 2e-139 | 99 |
