Gene Information

Name : STMDT12_C43930 (STMDT12_C43930)
Accession : YP_005250089.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : putative methyl-accepting chemotaxis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4583575 - 4584963 bp
Length : 1389 bp
Strand : +
Note : COG0840 Methyl-accepting chemotaxis protein

DNA sequence : 
GTGAAATATATAAATCATTACCGCTATTTGTTTGTCTGTTTTTTCCTTGCCATACTCCCTTTTTTTGCTTTATCTTTTCC
CGGTATAAGAGAGTATGTTTTTGATAACTTCATGGTTTCTGCAATTTACAATGGAGTCATTATTGCCATTTATATTACAG
GTTCTTTGTGTGCATTATTCACTATTCTTAAAAATATTTCAGCAAAAGACATATTAATAGCTCAGGACGCCAGTAGAAAA
AATAGCATTCTTTCTAACCTCAATCAGGTTTTGTTTGCCGGGGAGTCCAAACAGTGTGATTTCAATTTACTGATGGAATT
AGATGACAATGTGTCTACCGCCCGTAATCAACGATTGTCATTTATTATGAGCTGTAGCAATGTGTCGACGCTTGTTGGCC
TGTTGGGGACGTTTGCGGGTCTGTCTATTACGATTGGTTCAATCGGGAACTTATTGAGCTCGCCATCAGATGTTGGCGGT
GATAATGCAAGTAATACACTCAATATGATCGTGACAATGGTAGCGTCGCTTTCTGAACCATTGAAAGGGATGAATACCGC
ATTTGTATCTTCTATCTATGGTGTTGTTTGCGCCATACTCCTGACCTCACAAAGTGTTTTTGTTCGCAGCTCCTATTCCC
TTGTTTCTACGGAAATCAAAAAATTAAAAATCATAAGCAACAGAGCCAATAATAAACAGCGAAGCCTGCGGGTTGAATCA
GAGACGCTTGTAGAATTTAAAGAGTTGTTTAAAGCGTTTTTTGATAACTACCTGACAGTTGAAAACTTACGGACGCAGGA
TGAAGAAAAGAAACGAGAGATGCTATCAGATAGCTTTGTCACTTTGCAAAACCGACTATTGGATAACTCAGCAAAACTGG
AACAAATTTCTACGCTGATTGATGGTTATCTGGTAAGCAGTAACGAAAATCTCAAAAAATTATCTGACGGTGTAATAACA
ATTACCTCTCGTTTATCTGAAGGTAATATCCTGCTTGCTGATAATAATGCACGACTGGAGGCAATGAGTACAATACAAAA
TATTATAGATAAAAAGAATGATTCAATAATGACATCAGTTGATAAATGTTATCAGGAATCTCTTTCACATGGTAAGACCA
TAAACGATATTGCCGCTGGCAGTGCCGATATTTCTCATACTCTCGATGGGCTGAGAAAAGAAATGGATGAGGATATGAAT
AATGTTCATTTAGCGCTATCCGATCTATCGGCTACTGATAAAAAGATTATTGCCAATACTAAAGAGATTAGTGCTGAAAT
GGTTAGCTACCGTGATACCTATATGCCATTAATGGAAAAAATAACATCTATGCATCAGGAAATAGTAAAGCAACGTTTGT
TAAACAAGGAGGAAAAAAATGAAGATTAA

Protein sequence : 
MKYINHYRYLFVCFFLAILPFFALSFPGIREYVFDNFMVSAIYNGVIIAIYITGSLCALFTILKNISAKDILIAQDASRK
NSILSNLNQVLFAGESKQCDFNLLMELDDNVSTARNQRLSFIMSCSNVSTLVGLLGTFAGLSITIGSIGNLLSSPSDVGG
DNASNTLNMIVTMVASLSEPLKGMNTAFVSSIYGVVCAILLTSQSVFVRSSYSLVSTEIKKLKIISNRANNKQRSLRVES
ETLVEFKELFKAFFDNYLTVENLRTQDEEKKREMLSDSFVTLQNRLLDNSAKLEQISTLIDGYLVSSNENLKKLSDGVIT
ITSRLSEGNILLADNNARLEAMSTIQNIIDKKNDSIMTSVDKCYQESLSHGKTINDIAAGSADISHTLDGLRKEMDEDMN
NVHLALSDLSATDKKIIANTKEISAEMVSYRDTYMPLMEKITSMHQEIVKQRLLNKEEKNED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STM4258 NP_463123.1 methyl-accepting chemotaxis protein Not tested SPI-4 Protein 0.0 100
siiB CAE11794.1 putative inner membrane protein Virulence SPI-4 Protein 0.0 100
mac YP_219124.1 methyl-accepting chemotaxis protein Not tested SPI-4 Protein 0.0 99
STY4453 NP_458555.1 putative integral membrane protein Not tested SPI-4 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C43930 YP_005250089.1 putative methyl-accepting chemotaxis protein VFG0578 Protein 0.0 100