Gene Information

Name : STMDT12_C38990 (STMDT12_C38990)
Accession : YP_005249595.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Resistance
Product : putative ABC transporter system ATP-binding component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4052011 - 4052706 bp
Length : 696 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGTCCGTTACGCATATCCCTCAGGTGGCGATCGAAACCCGCCACTTATACAAACGGTTCGGTGACGTTACCGCCCTGGA
TGACATTAATCTGCGCATTGCGCAGGGTGAATTTGTCGCCATTATGGGCGCTTCTGGTTCTGGTAAAACCACGCTGATGA
ATATTCTGACGTGCCTTGATACGGCGACGGAAGGGCAGGTGTTTCTTGATGGCACCGATGCCGCCGCGCTGGATGAAGAG
GGGCGCCGTCGCTTTCGCGCCGAGAAAATCGGCCTGGTATTTCAGCAGTTCCATTTGATCCCGTTCTTAACTGCGCTGGA
AAACATCATGCTCGCCCAGCATTACCACAGCGTGGTGGATGAAGCGGCGGCGAGGAAGGTGCTGGAACAGGTAGGGCTTG
GGCATCGTGTGACGCACCTGCCGAGCCAGCTTTCCGGTGGTGAGCAGCAGCGTGTGTGTATCGCCCGGGCGCTGGTCAAC
GAACCGCCGGTTATTTTCGCGGATGAACCGACGGGCAACCTGGATGAAGAGAATGAGCAGCGGGTGCTGGATCTGCTCAC
CGATCTGCATCGTCAGGGGCGCACGATTGTGATGGTGACGCACAACCCTGCGCTTGGGCAGTTTGCCGACCGTATTCTGC
GGCTGCAACACGGTAAATATCTGGGTGAGGAGGCCAATCAACATGCGCTGGCATAA

Protein sequence : 
MSVTHIPQVAIETRHLYKRFGDVTALDDINLRIAQGEFVAIMGASGSGKTTLMNILTCLDTATEGQVFLDGTDAAALDEE
GRRRFRAEKIGLVFQQFHLIPFLTALENIMLAQHYHSVVDEAAARKVLEQVGLGHRVTHLPSQLSGGEQQRVCIARALVN
EPPVIFADEPTGNLDEENEQRVLDLLTDLHRQGRTIVMVTHNPALGQFADRILRLQHGKYLGEEANQHALA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C38990 YP_005249595.1 putative ABC transporter system ATP-binding component NC_008702.1.4606598. Protein 6e-33 46
STMDT12_C38990 YP_005249595.1 putative ABC transporter system ATP-binding component CP001581.1.gene798.p Protein 6e-36 45
STMDT12_C38990 YP_005249595.1 putative ABC transporter system ATP-binding component NC_012469.1.7686878. Protein 3e-45 45
STMDT12_C38990 YP_005249595.1 putative ABC transporter system ATP-binding component NC_012469.1.7685735. Protein 8e-40 44