Gene Information

Name : STMDT12_C38160 (STMDT12_C38160)
Accession : YP_005249512.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : transcriptional regulator C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3981094 - 3981858 bp
Length : 765 bp
Strand : -
Note : COG3710 DNA-binding winged-HTH domains

DNA sequence : 
ATGTTATGGATAATTAACGATAATATTGAATTTAATCCAGAAATGAATCGCCTGGCTTCATTATCGAGGCCAGATCTCAA
CATTATTCTGACAACGCCCGCCAGCCGCTGCTTGCGCCTTCTGCTGGAAAACGCCCCCTCCGTCGTCTCACAACAAACAT
TCTTTCAAAAAGTGTGGGAAGAAGACGGCATGGTGGTGTCGGCAAATACGCTTTATCAGAATATCTCCATTATTCGCCGC
GGATTACGTACCGTTGGCGAAAATGAAGATACGCTGATAATCACGGTTCCGCGTAGAGGCTTTCAGATTGAGCCAGGTGT
GAGCCTCATGACCATCCGCAAAGACTTCGCTCAGGCAATAGAAAAAAAGGGTGAGACGCCACCGCGTATGTCAGGGCGTT
GGTTTAAACATTATGTACCTGTACTTTGGATGACCGGGACATTTGCTGTCGGTATTTTGCTTGGCACTATAAGCTGGCAA
ACCGTTCCCGATAAGGATTTTTACGATCGCTACACGCTGGTTGAAACAACTCAGGGCTGTCATTTTTTCTCGCGGAATGA
AGATATCGAAAGCGGCAGCCGCTTTGCAAGCTATAAGTCAATGATTCTAAAAACCGGTATGGATTGTCAGAAATACCCAT
GGGTCTATTTCCCTTCCAGCAGTCGCACCCCAGCGGTTACGGCATTGATTTGTCAGCAACCTTATAAAACGCGCGGTGAT
ACAGGCTGCGTGACGCTTTTTTTCCGCGGGGTGACACATGGGTAA

Protein sequence : 
MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLYQNISIIRR
GLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQ
TVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQQPYKTRGD
TGCVTLFFRGVTHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
marT NP_462658.3 transcriptional regulator Not tested SPI-3 Protein 5e-119 100
marT AAD16956.1 putative transcriptional regulator MarT Virulence SPI-3 Protein 2e-118 100
marT YP_218667.1 transcriptional regulatory protein Not tested SPI-3 Protein 4e-118 99
ECs3704 NP_311731.1 sensory transducer Not tested LIM Protein 7e-54 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C38160 YP_005249512.1 transcriptional regulator C VFG0570 Protein 2e-119 100