Gene Information

Name : STMDT12_C32330 (STMDT12_C32330)
Accession : YP_005248929.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3364062 - 3364721 bp
Length : 660 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCGGGCCTGAGTAAAATGGGTTTCAGCGT
CGACTGGTTTACCGAGGGACGTCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTTATTTTAGATTTGACGC
TGCCAGGCATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCGGTACTGATCCTGACGGCG
CGCGACGCGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGA
GGTCGCCGCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGC
TCAATCCAGGCAATCTCGTCGCGACGCTTGCCGGCGAACCACTGGCCCTAAAACCAAAAGAGTTCGCGTTGCTGGAACTC
TTACTGCGCAACAAAGGTCGCGTGCTGCCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAG
CAATGCAGTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTGCACGGCATCGGCT
ACACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 1e-34 46
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-30 43
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 6e-26 42
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 2e-23 41
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 3e-28 41
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-30 41
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 3e-28 41
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 7e-35 47
STMDT12_C32330 YP_005248929.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 2e-26 41