Gene Information

Name : STMDT12_C02990 (STMDT12_C02990)
Accession : YP_005245995.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : putative fimbrial assembly chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 342830 - 343543 bp
Length : 714 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGGCGGTAGCTTTGTTCGCCACTAATTCTATGGTTTCAGTATATGCCGTCAACCAGCAATTAAATTCAGCCACTAAATT
ATTCAGCGTGAAGCTGGGGGCTACACGAGTGATTTATCACGCTGGTACGGCTGGAGCGACGCTCTCGGTGAGCAACCCGC
AGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGCAGACAAAAGTTCGCCTGCTCCCTTTTTGGTGATGCCGCCT
CTATTTCGTTTAGAAGCAAACCAGCAGAGTCAACTGCGTATTGTCCGTACTGGTGGTGACATGCCAACGGATCGTGAGAC
TTTACAGTGGGTCTGTATAAAGGCGGTACCACCCGAAAATGAACCGTCGGATACACAGGCTAAGGGCGCGACCCTTGACC
TCAATTTGTCCATCAACGCCTGTGATAAGCTGATTTTCCGCCCGGATGCCGTGAAGGGGACGCCGGAAGATGTTGCAGGA
AATTTAAGATGGGTGGAGACGGGCAACAAACTTAAGGTGGAGAACCCCACCCCGTTTTACATGAATTTAGCCTCTGTCAC
AGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATGTCCCCCCCTTTGCTGACAAAACACTAAATATGCCAGGTAGTGCCC
ATGGTGATATCGAGTGGAGAGTTATTACAGACTTTGGTGGTGAAAGTCATCCGTTCCACTACGTTCTTAAATAA

Protein sequence : 
MAVALFATNSMVSVYAVNQQLNSATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPP
LFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAVKGTPEDVAG
NLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIEWRVITDFGGESHPFHYVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safB NP_454906.1 periplasmic fimbrial chaperone protein Not tested SPI-6 Protein 3e-102 92
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 5e-55 49
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 5e-55 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C02990 YP_005245995.1 putative fimbrial assembly chaperone VFG0943 Protein 1e-52 49
STMDT12_C02990 YP_005245995.1 putative fimbrial assembly chaperone VFG0850 Protein 3e-56 48
STMDT12_C02990 YP_005245995.1 putative fimbrial assembly chaperone VFG0858 Protein 8e-53 48
STMDT12_C02990 YP_005245995.1 putative fimbrial assembly chaperone VFG0852 Protein 8e-55 47