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Name : STMDT12_C00230 (STMDT12_C00230) Accession : YP_005245719.1 Strain : Salmonella enterica T000240 Genome accession: NC_016860 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : - COG ID : - EC number : - Position : 25758 - 28424 bp Length : 2667 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC CAGCGTAACTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCACTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATT TCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACCTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGG ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCAACCAGAGACATTGCCTTCCAGGCGGTGAAAACGACGGG AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG GGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC GAAATACTGGGATGAAGGTATTAATGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCCCAG GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCCTTCCTTTTCGCGGGCTAC AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCTTCGCACCGACCATTCACGGCATTGCCAGAAGCAAC GCGCAAGTGACCATTCGGCAAAACGGCTACATCATTAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT CTATCCTACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAGTCCGACGGTTCTATTAATCGTTATAACGTGCCCT ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATGCGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGT CAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTACACGTTGGATGATACCACGTGGAA ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAACCTTT ATTACACCAGGAGGGGGAAAGTACAACTCGATATCAATCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGC CAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGTATTGCATG GAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC TAAGTCAATGGCTGCAACACGGTGATGAGGTCACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA CAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG TTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCTAGCCTGGAATACGATGGCGCGAAAGGCAACGCCAATATTGGCT ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCCTGAGTGGCGGCCTGGTGGCGCACGCGCATGGAGTG ACGCTAAGCCAGCCGTTAGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAATGTCGGCGTTGTCGACCAGCC GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACAACATATCGCCAAAACCGTATGGCGCTGGACG TTAACGCCATGGCGGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC CGCTTTAAAGCGCGGGTCGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT GACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAGGCCGGGGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCG TTCTGCACGTTCGCTGGGGGAACCTACCGGATCAACAGTGCGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTG AGTCGACAACATGCGGAGTGTCATTAA Protein sequence : MAQRRQHAFVQLHDVMRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR FDFAQQRLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYS TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS QKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTDK QHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGV TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQIL SRQHAECH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 51 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STMDT12_C00230 | YP_005245719.1 | outer membrane usher protein FimD | VFG0876 | Protein | 0.0 | 52 |
| STMDT12_C00230 | YP_005245719.1 | outer membrane usher protein FimD | VFG1645 | Protein | 0.0 | 50 |
| STMDT12_C00230 | YP_005245719.1 | outer membrane usher protein FimD | VFG0912 | Protein | 0.0 | 50 |
| STMDT12_C00230 | YP_005245719.1 | outer membrane usher protein FimD | VFG0446 | Protein | 1e-178 | 49 |
| STMDT12_C00230 | YP_005245719.1 | outer membrane usher protein FimD | VFG0454 | Protein | 3e-163 | 43 |
