Gene Information

Name : STMDT12_C19720 (STMDT12_C19720)
Accession : YP_005247668.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Resistance
Product : putative amino-acid ABC transporter ATP-binding protein YecC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2036153 - 2036905 bp
Length : 753 bp
Strand : -
Note : COG1126 ABC-type polar amino acid transport system, ATPase component

DNA sequence : 
ATGAGTGCGATCGAAGTTACCAACCTGGTCAAAAAATTTCATGGTCAAACGGTGCTGCACGGTATTGACCTTGAGGTGAA
GCCCGGAGAAGTCGTCGCCATTATCGGCCCGAGCGGCTCAGGGAAGACAACGTTATTACGCTGTATTAACCTGCTGGAAC
AACCGGAAGCGGGCACCATTAAAGTGGGCGATATTATCATCGATACCGCCCGCCCATTCAGCCAGCAAAAAGGGTTGATT
CGCCAGCTACGCCAGCATGTCGGCTTTGTCTTTCAGAGTTTTAACCTGTTCCCGCATCGTACCGTGCTGGAAAATATCAT
TGAAGGTCCGGTGATTGTAAAGGGAGAGCCGAAAGCCGAGGCGACGGCGCTGGCGCGGGAACTGTTAGCCAAAGTCGGGT
TGGCCGGTAAAGAGTCCCGTTATCCGCGCCGCCTGTCGGGCGGGCAACAGCAGCGCGTGGCGATTGCGCGCGCGCTGGCG
ATGCGCCCGGAAGTGATTCTGTTTGATGAGCCGACGTCGGCGCTTGATCCTGAATTAGTCGGCGAGGTGCTTAATACGAT
TCGCCAGCTGGCGCAGGAAAAGCGCACAATGGTGATCGTTACTCACGAAATGAGCTTTGCGCGTGACGTGGCTGATCGGG
CAATATTTATGGATCAGGGGCAAATCGTCGAGCAGGGGCCGGCGAAAACCTTGTTCGCCGATCCTCAGCATCCGCGTACC
CGCCAGTTCCTTGAGAAATTTTTAGTGAAATAA

Protein sequence : 
MSAIEVTNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIKVGDIIIDTARPFSQQKGLI
RQLRQHVGFVFQSFNLFPHRTVLENIIEGPVIVKGEPKAEATALARELLAKVGLAGKESRYPRRLSGGQQQRVAIARALA
MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGQIVEQGPAKTLFADPQHPRT
RQFLEKFLVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C19720 YP_005247668.1 putative amino-acid ABC transporter ATP-binding protein YecC NC_012469.1.7686878. Protein 5e-25 43