Gene Information

Name : STMDT12_C01930 (STMDT12_C01930)
Accession : YP_005245889.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : iron-hydroxamate ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 225977 - 226774 bp
Length : 798 bp
Strand : +
Note : COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCCTTTCGTGTGCCGGGCCGCACGCTTTT
ACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGCGTCACCGGACTTATTGGTCATAATGGTTCCGGTAAATCCACGCTGT
TAAAAATGCTGGGCCGCCATCAGCCGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGC
AAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCACAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGC
GATTGGCCGCTATCCGTGGCACGGCGCGCTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGC
TGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTAGACAGTCTTTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATG
CTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCT
GGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTAGCGGTGCTGCACGATATCAACATGGCGGCCCGCT
ACTGTGATTATTTAGTCGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACG
CTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCGGCACCTGTGAGTTTTGTGTATTAA

Protein sequence : 
MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIGHNGSGKSTLLKMLGRHQPPSEGDILLDNQPLASWSS
KAFARKVAYLPQQLPQAEGMTVRELVAIGRYPWHGALGRFGVADREKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAM
LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVVAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRSDT
LEQIYGIPMGILPHPAGAAPVSFVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-44 43
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-44 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-46 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-39 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-39 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-39 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-39 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C01930 YP_005245889.1 iron-hydroxamate ABC transporter ATP-binding protein BAC0164 Protein 3e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C01930 YP_005245889.1 iron-hydroxamate ABC transporter ATP-binding protein VFG0925 Protein 1e-44 44
STMDT12_C01930 YP_005245889.1 iron-hydroxamate ABC transporter ATP-binding protein VFG1042 Protein 3e-44 43