Gene Information

Name : STMDT12_C14190 (STMDT12_C14190)
Accession : YP_005247115.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1485212 - 1485646 bp
Length : 435 bp
Strand : +
Note : COG0457 FOG: TPR repeat

DNA sequence : 
ATGATGATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGT
TTATGCCAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGTTGGCTGGTGATGGCCC
AGCCATGGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTC
TATGGACATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGA
ACCCGGGTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGTTATGCGGATGCCTCATGGAGTGAGATTCGCCAGA
ATGCGCAAATAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 5e-63 100
sscB AAC28884.1 SscB Virulence SPI-2 Protein 4e-63 100
sscB CAA12190.1 SscB Virulence SPI-2 Protein 4e-63 100
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 5e-63 100
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 2e-62 99
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 2e-62 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C14190 YP_005247115.1 type III secretion low calcium response chaperone LcrH/SycD VFG0504 Protein 2e-63 100