Gene Information

Name : STMDT12_C14170 (STMDT12_C14170)
Accession : YP_005247113.1
Strain : Salmonella enterica T000240
Genome accession: NC_016860
Putative virulence/resistance : Virulence
Product : putative pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1484238 - 1484741 bp
Length : 504 bp
Strand : +
Note : -

DNA sequence : 
ATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCGATAT
CATGCGCAGCTATAACGTAGAAAAACAACGGCTGGCCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAAACAA
TTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGGGGCC
GTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTGGTGT
AGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCCCTGA
CGGAAATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGCTGAA
ATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVLTIGLGA
VGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKSLTEIMEKATEIMQQIIGVGSSLVTVLAE
ILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 5e-64 100
sseD CAA12188.1 SseD Virulence SPI-2 Protein 3e-64 100
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 5e-64 99
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 5e-64 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 4e-63 99
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 7e-62 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMDT12_C14170 YP_005247113.1 putative pathogenicity island effector protein VFG0502 Protein 1e-64 100