Gene Information

Name : STM474_0340 (STM474_0340)
Accession : YP_005241270.1
Strain : Salmonella enterica ST4/74
Genome accession: NC_016857
Putative virulence/resistance : Unknown
Product : IS3 transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 368675 - 369562 bp
Length : 888 bp
Strand : -
Note : -

DNA sequence :
ATGGCGGCATCGGTGGATCCTGCGCCTAAATCGAGGATCGCCAGCGGAGCGTCGCATCCAGGCGTCGTTAACGCGCCAGC
CACAGCCATGTTGGCTTCCACACCACCGACTTCAACTGGGGTATTTAACCGGGCGCTTAGCTCGCTGGCGATAGCCTGCA
TCTGTAAGCGGTACGTCTGGCATCAGCGTCGTCATCAGATAAACCGGCGTCAGCGGTTCCACCTTGTCTGTGATAACGTC
TTCCGGGAAGCATTCAGTGACGCAAAACAACGCTATGGTGCGCCACGCCTGACGGATGAGCTTCGTGCTCAGGGTTACCA
GTTCAACGTGAAAACCGTGGCGGCCAGCCTGCGTCGGCAGGGGCTGCGGGCGAAAGCCTCGCGCCGGTTCCGTCCGGTCA
GTTACCGCAAACATGGTCTGCCAGTCTCAGAGAATCTGCTGAAGCAGGACTTTTACGCCAGCGGCCCGAATCAGAAGTGG
GTGGGTGACATCACGTATCTTCGCACTGGTGAAGGCTGGCTTTATCTGGCCGTGGTTATCGATCTGTGGTCGCGGTCAGT
CATTGGCTGGTCGATGTCTTCGCGGATGACAGCACAGCTTGCCTGCGATGCGTTACAGATGGCGCTGTGGCGGCGTAAAT
GTCCGGAAAATGTCATCGTGCATACAGACAGAGGCGGTCAGTACTGTTCAACGGATTATCAGAGCTTACTGAAACGCCAT
AATCTGCGGGGAAGTATGAGCGCCAGAGGTTGTTGTTACGACAATGCCTGTGCGGAAAGCTTCTTCCATACGCTGAAGGT
GGAATGTATCCACGGAGAGGACTTTGTCAGCCGGGAAATAATGCGGACAGCAGTGTTTAATTATAGTGAGTGTGATTACA
ATCGGTAG

Protein sequence :
MAASVDPAPKSRIASGASHPGVVNAPATAMLASTPPTSTGVFNRALSSLAIACICKRYVWHQRRHQINRRQRFHLVCDNV
FREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFRPVSYRKHGLPVSENLLKQDFYASGPNQKW
VGDITYLRTGEGWLYLAVVIDLWSRSVIGWSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRH
NLRGSMSARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYSECDYNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 9e-91 87
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-90 87
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 3e-90 87
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-85 80
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-35 43
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-35 43
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-35 43
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-35 43
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-35 43
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-35 43
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-35 43
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-35 43
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STM474_0340 YP_005241270.1 IS3 transposase VFG1631 Protein 1e-85 80
STM474_0340 YP_005241270.1 IS3 transposase VFG1706 Protein 6e-36 43