Gene Information

Name : sscA (STM474_1405)
Accession : YP_005242300.1
Strain : Salmonella enterica ST4/74
Genome accession: NC_016857
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1441331 - 1441846 bp
Length : 516 bp
Strand : +
Note : -

DNA sequence : 
GTGGGGGGAAATTTCCAGTATGATAGCGCAGAAAACGTACTCATGAAAAAAGACCCGACCCTACAACAGGCACATGACAC
GATGCGGTTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTTGGATGACGATGTTACACAGCCGCTTAATACTCTGTATC
GCTATGCCACGCAGCTTATGGAGGTAAAAGAATTCGCCGGCGCAGCGCGACTTTTTCAATTGCTGACGATATATGATGCC
TGGTCATTTGACTACTGGTTTCGGTTAGGGGAATGCTGCCAGGCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGG
ACGCGCGGCACAAATTAAGATTGATGCGCCGCAGGCGCCATGGGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCT
GTTATGCAATCAAAGCGTTAAAGGCCGTGGTGCGTATTTGCGGCGAGGTCAGTGAACATCAAATTCTCCGACAGCGTGCA
GAAAAGATGTTACAGCAACTTTCTGACAGGAGCTAA

Protein sequence : 
MGGNFQYDSAENVLMKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYATQLMEVKEFAGAARLFQLLTIYDA
WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA
EKMLQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 2e-70 100
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 1e-70 100
sscA CAA12186.1 SscA Virulence SPI-2 Protein 1e-70 100
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 3e-69 99
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 3e-69 99
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 7e-70 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sscA YP_005242300.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 5e-71 100