Gene Information

Name : stfC (STM14_0235)
Accession : YP_005235866.1
Strain : Salmonella enterica 14028S
Genome accession: NC_016856
Putative virulence/resistance : Virulence
Product : putative fimbrial outer membrane usher
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 232007 - 234664 bp
Length : 2658 bp
Strand : +
Note : outer membrane usher protein StfC (gi|3747030)

DNA sequence :
ATGGCTCACTATAAAAAATTTCGTCTGAGCACGCTTGCGGCCGTGGTGGGTATTGTTCTGGCTGTCGGTCCGGAAAATAG
CTACGCGGAAGCGCCCATTCAATTTAATACCCGATTTCTTGATGTTAAAGATGATGCCAGCCTGGATCTCTCCCGTTTTT
CCCGTAAAGGCTACATTATGCCGGGGAGCTATCATCTCCAGGTGCTGGTCAATCAGAGTCAAATTGTCCAGGATAATGTT
ATTACGTATTCCGTTGATAATAACGATCCTGATAACACCTATCCCTGTTTATCGCCTGAACTGGTCTCGCTGCTGGGGTT
AAAACCTGAAATAGCAGATAAAATGATCTGGATAAATGCCGGTCAGTGTCTGCAACCAGATCAACTGGAAGGGATGGAAA
CCCAAACGGATTTAAGCCAGTCAACGCTGACGGTGATTATTCCGCAGGCGTATCTGGAATACAGCGATGAAGAGTGGGAT
CCACCTTCCCGCTGGGATGAAGGGATTCCCGGCGTATTATTTGACTACAACGTTAACAGCCAGTGGCGACATGCTGAACA
TGATGACGGCGATGAATATGACATCAGCGGCAACGGCACGGTGGGTGCCAACCTCGGCGCGTGGCGTTTGCGCGCGGACT
GGCAGGCTAACTATCGTCACGAAAATGACAGCGAAGATAAAGACAACTTTGGCTCCAGTTCCGAACAGAACTGGGACTGG
AACCGCTATTACGCCTGGCGGGCGATCCCGCAGCTCCGGGCGCAGCTAACGCTGGGCGAAGGATCGCTGGAATCCGATAT
TTTCGACGGCTTTAACTATGTTGGCGGCAGCCTTATCACCGACGATCAGATGTTACCGCCTAATCTGCGCGGCTACGCCC
CGGATATATCAGGCGTGGCGCGCACCAACGCCAAAGTCACCGTGACCCAGCGCGGGCGGGTGATTTATGAGTCGCAGGTC
CCGGCTGGGCCGTTTCGCATTCAGGATATTAATGAAACGGTATCCGGCGATCTACACGTCAAAATTGAAGAACAAAGCGG
TCAGGTGCAGGAATATGACGTCAGCACCGCCTCCATTCCGTTTCTGACCCGTCCCGGCCAGGTGCGCTACAAGTTGGCAG
CCGGGCGACCGCAGGACTGGGATCACAATATGGAAGGCGGCTTTTTCACCTCAGCCGAAGCCTCCTGGGGGATCGCTAAC
GGCTGGTCGCTGTACGGCGGTGCCATCGGTGAGCAGGATTATCAGGCGCTGGCGTTAGGACTGGGGCGCGATCTGGCGCT
GCTGGGCGCGTTTTCCGTCGATGTCACCCATTCCCGTGCGACGCTGCCAGAGGGTAGCGCCTACGGCGACGGCACCATTC
AGGGTAACTCGTTCCGTGCCAGCTACGCTAAAGATTTTGATGATATAGACAGCCGTCTGACGTTTGCTGGTTATCGCTTT
TCCGAAGAAAACTACATGACGATGGACGAGTTTATCGATACGCATAATGACGATAACGATCGTCAGCGCACCGGCCACGA
TAAAGAGATGTATACCCTGACGTACAGCCAGAACTTTTCGGCAATAAACGTCAACGCCTATATCAACTACACCCATCGCA
CCTACTGGAATCAACCTAACCAGGACAGCTATAACCTGACGCTGTCGCACTATTTCGATGTCGGTGAGGTGCGCGGGATC
AGTCTGTCGGTGAACGGTTTTCGCAACGAATATGACAATGAGCGTGATGACGGCGTGTACGTCTCGCTCAGTATTCCGTG
GGGCAACAACCGCACGCTGAGCTACAACGGCTCCTTTAGCGATGACAACAACAGCAATCAGGTCGGCTATTACGAGCGCA
TTGACGATCGCAATAACTACCAGATCAACGCTGGTCGCGCGGATAACGGTGCGACTCTCGACGGCTACTACCGTTATCAA
GCGAGCTATGCCGACATTGACGTCAGTGCGAACTATCAGGAAGGCGACTATACCTCCGGCGGACTGAACATCCAGGGCGG
CGCGACGCTGACTGCTAAAGGCGGGGCGTTGCACCGCACCAGCGTCAACGGCGGCTCGCGGCTGCTGGTGGATGTCGGCG
ATGAAGCGAACGTACCCATCTCCGGCTACAGCACGCCGGTATATACCAACGCGTTTGGTAAAGCCGTCATTGTCGACGTC
AACGACTACTACCGCAACCAGGTGAAAATCGACATTACCCAGTTGCCGGAAGACGCGGAAGCAATCCTCTCCATCGCTCA
GGCGACCCTGACGGAAGGGGCGATCGGTTATCGCCGCATGGAGGTGCTCAGCGGTAAAAAAGCCATGGCCAGTATCCGCC
TGCGCGATGGCGGCACGCCGCCCTTCGGCGCAGAGGTTTACAACAGTCGCCAGCAACAGTTAGGGATCGTAGGTGAAGAC
GGCAGCGTTTATCTGATCGGCATTAACCCCGGCGAGCGGTTGCAGGTGACATGGGAAGGTAAAACGCAGTGTGAAGCGAC
GTTGCCCGATCCGCTGCCGGGCGATCTGTTTAGCGGCCTGTTGCTGCCGTGCATCGGCGACGCTTCATCACCTGAGGCAA
CGCAGCCCGAAGAGAAACCATTACTCCAGCTTCATACGCAGCGGCGGACGTCTTCGACGCAACCCGAAGCGCTCTCTTCT
CGTTATCCAACACATTGA

Protein sequence :
MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNV
ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD
PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW
NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV
PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN
GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF
SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI
SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQ
ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV
NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGED
GSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSS
RYPTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 8e-158 46
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 1e-152 43
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 4e-152 43
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 3e-152 43
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 1e-152 43
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 9e-153 43
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 8e-153 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
stfC YP_005235866.1 putative fimbrial outer membrane usher VFG1548 Protein 7e-153 43
stfC YP_005235866.1 putative fimbrial outer membrane usher VFG0884 Protein 5e-153 43
stfC YP_005235866.1 putative fimbrial outer membrane usher VFG0895 Protein 3e-153 43