Gene Information

Name : STMMW_06461 (STMMW_06461)
Accession : YP_005231707.1
Strain : Salmonella enterica D23580
Genome accession: NC_016854
Putative virulence/resistance : Resistance
Product : transcriptional activator RamA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 677826 - 678167 bp
Length : 342 bp
Strand : +
Note : pfam_scan;Pfam:PF00165; E()=8.0E-7;score=28.5;query 15-55;description=HTH_AraC

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGGGACGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCTCGACACCGACCAGAAGGTGTATGATATTTGTCTCAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAAGCATGGCCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYVRERKLKLAARDLLDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKEKHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-18 48
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-16 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-16 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP001138.1.gene612.p Protein 4e-43 99
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP001918.1.gene327.p Protein 1e-18 48
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP000647.1.gene4499. Protein 3e-18 48
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP001138.1.gene4488. Protein 2e-18 48
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP000647.1.gene1624. Protein 1e-17 46
STMMW_06461 YP_005231707.1 transcriptional activator RamA NC_010558.1.6276025. Protein 6e-17 46
STMMW_06461 YP_005231707.1 transcriptional activator RamA NC_002695.1.914293.p Protein 2e-17 45
STMMW_06461 YP_005231707.1 transcriptional activator RamA BAC0371 Protein 2e-17 45
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP001918.1.gene2033. Protein 5e-18 45
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP000034.1.gene4505. Protein 4e-17 44
STMMW_06461 YP_005231707.1 transcriptional activator RamA NC_002695.1.917339.p Protein 3e-18 43
STMMW_06461 YP_005231707.1 transcriptional activator RamA BAC0560 Protein 3e-18 43
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP000034.1.gene1596. Protein 3e-18 43
STMMW_06461 YP_005231707.1 transcriptional activator RamA CP001138.1.gene1637. Protein 4e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_06461 YP_005231707.1 transcriptional activator RamA VFG0585 Protein 1e-18 48
STMMW_06461 YP_005231707.1 transcriptional activator RamA VFG1038 Protein 6e-17 46