Gene Information

Name : STMMW_36291 (STMMW_36291)
Accession : YP_005234642.1
Strain : Salmonella enterica D23580
Genome accession: NC_016854
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein (LpfB)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3849543 - 3850241 bp
Length : 699 bp
Strand : -
Note : pfam_scan;Pfam:PF00345; E()=1.1E-46;score=157.5;query 25-144;description=Pili_assembly_N; pfam_scan;Pfam:PF02753; E()=2.0E-16;score=59.4;query151- 224;description=Pili_assembly_C; tmhmm; query 1-233

DNA sequence : 
ATGAACCGCTCACGTTTGATATCTTGCACAGCACTGGTGCTGGCGTTGATTGCTCAAAACAGTTTTGCCGGAGGCGTGGC
ATTAAGCAGCACGCGTGTTATTTATGACGGTAGTAGAAAGGAAGCTTCTCTTACGGTAAATAATAAAAGCACCACGGATG
AATTTCTCATTCAGTCATGGATTGATGATGCTAACGGTAATAAAAAGACGCCCTTTATCATCACTCCACCGTTATTTAAA
TTAAGCCCGACTAAAAATAACGTTTTACGTATTGTTAATACGACGAACACGTTACCGCAGGATCGCGAGTCCGTTTATTG
GATTAACGTAAAAGCTATTCCTGCCAAAAGTGAAGACGCGGAAGCTAAAAACGTACTGCAGATCGCCGTACGTACCCGCT
TAAAACTGTTCTATCGCCCGGCGGGCCTGAAAGGCAATAGCATGGACGGCTGGAACAAACTGCAGTTCACCAGCGCAGGG
GCTAACCAGATCAAAGTGGAAAACCCATCTGCCTTTAACCTGACGTTTAATAAATTTTATGCCAACGGCCGTGATATTGA
AAAAACGGGAATGGTTCCGGCAAAAGGCTCATTGAATATTGAACTGCCAGCCGGCACCGGCAAGGTAAGCGAAGTTAAAT
ACAACATTATTAATGACTTTGGCACTGCTGGCGACATGTTGACACAGCGCGTTAACTAA

Protein sequence : 
MNRSRLISCTALVLALIAQNSFAGGVALSSTRVIYDGSRKEASLTVNNKSTTDEFLIQSWIDDANGNKKTPFIITPPLFK
LSPTKNNVLRIVNTTNTLPQDRESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAG
ANQIKVENPSAFNLTFNKFYANGRDIEKTGMVPAKGSLNIELPAGTGKVSEVKYNIINDFGTAGDMLTQRVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-40 42
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_36291 YP_005234642.1 fimbrial chaperone protein (LpfB) VFG0455 Protein 4e-104 100
STMMW_36291 YP_005234642.1 fimbrial chaperone protein (LpfB) VFG1644 Protein 2e-38 42
STMMW_36291 YP_005234642.1 fimbrial chaperone protein (LpfB) VFG0911 Protein 2e-38 42
STMMW_36291 YP_005234642.1 fimbrial chaperone protein (LpfB) VFG0445 Protein 1e-40 42