Gene Information

Name : STMMW_28501 (STMMW_28501)
Accession : YP_005233877.1
Strain : Salmonella enterica D23580
Genome accession: NC_016854
Putative virulence/resistance : Virulence
Product : secretory protein (associated with virulence)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3025578 - 3026369 bp
Length : 792 bp
Strand : -
Note : pfam_scan;Pfam:PF01311; E()=8.2E-80;score=267.2;query 8-247;description=Bac_export_1; tmhmm; query 1-264

DNA sequence :
ATGTTTTACGCGTTGTACTTTGAAATTCATCACCTGGTTGCGTCTGCGGCGCTAGGGTTTGCTCGCGTGGCGCCGATTTT
TTTCTTCCTGCCGTTTTTGAATAGCGGGGTATTAAGCGGTGCGCCGAGAAACGCCATTATCATCCTGGTGGCATTGGGAG
TATGGCCGCATGCATTGAACGAGGCGCCGCCGTTTTTATCGGTGGCGATGATCCCGTTAGTTCTGCAAGAAGCGGCGGTA
GGCGTCATGCTGGGCTGTCTGCTGTCATGGCCTTTTTGGGTTATGCATGCGCTGGGTTGTATTATCGATAACCAGCGAGG
GGCAACGCTAAGTAGTAGTATCGATCCGGCAAACGGTATTGATACCTCGGAAATGGCTAATTTCCTGAATATGTTTGCCG
CTGTCGTTTATTTACAAAACGGCGGTCTGGTCACGATGGTTGACGTGTTAAATAAAAGCTATCAGCTATGCGATCCGATG
AACGAGTGCACGCCTTCATTACCGCCGCTATTAACGTTTATTAATCAGGTGGCTCAAAACGCCTTGGTTCTGGCCAGTCC
GGTGGTATTAGTGCTGTTGCTGTCAGAAGTATTCCTGGGTTTATTGTCGCGCTTTGCTCCGCAAATGAACGCTTTTGCGA
TTTCACTGACGGTAAAAAGCGGTATTGCCGTTTTAATTATGCTGCTTTATTTCTCTCCGGTACTACCGGACAATGTACTG
CGACTCTCTTTCCAGGCCACAGGGTTAAGCAGTTGGTTTTACGAGCGAGGGGCGACGCATGTCCTCGAATAA

Protein sequence :
MFYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAV
GVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPM
NECTPSLPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLPDNVL
RLSFQATGLSSWFYERGATHVLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaR NP_461809.1 needle complex export protein Virulence SPI-1 Protein 9e-106 100
spaR YP_217807.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-103 99
spaR NP_457282.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-104 99
spaR NP_806491.1 virulence-associated secretory protein Virulence SPI-1 Protein 2e-104 99
spaR AAS66867.1 SpaR Not tested SSR-2 Protein 7e-33 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_28501 YP_005233877.1 secretory protein (associated with virulence) VFG0549 Protein 4e-106 100
STMMW_28501 YP_005233877.1 secretory protein (associated with virulence) VFG1014 Protein 8e-36 52
STMMW_28501 YP_005233877.1 secretory protein (associated with virulence) VFG2453 Protein 7e-32 45