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Name : STMMW_02021 (STMMW_02021) Accession : YP_005231281.1 Strain : Salmonella enterica D23580 Genome accession: NC_016854 Putative virulence/resistance : Virulence Product : outer membrane usher protein stfc (putative fimbrial outer membrane usher) Function : - COG functional category : - COG ID : - EC number : - Position : 231296 - 233953 bp Length : 2658 bp Strand : + Note : pfam_scan;Pfam:PF00577; E()=6.1E-265;score=880.3;query 34-830;description=Usher DNA sequence : ATGGCTCACTATAAAAAATTTCGTCTGAGCACGCTTGCGGCCGTGGTGGGTATTGTTCTGGCTGTCGGTCCGGAAAATAG CTACGCGGAAGCGCCCATTCAATTTAATACCCGATTTCTTGATGTTAAAGATGATGCCAGCCTGGATCTCTCCCGTTTTT CCCGTAAAGGCTACATTATGCCGGGGAGCTATCATCTCCAGGTGCTGGTCAATCAGAGTCAAATTGTCCAGGATAATGTT ATTACGTATTCCGTTGATAATAACGATCCTGATAACACCTATCCCTGTTTATCGCCTGAACTGGTCTCGCTGCTGGGGTT AAAACCTGAAATAGCAGATAAAATGATCTGGATAAATGCCGGTCAGTGTCTGCAACCAGATCAACTGGAAGGGATGGAAA CCCAAACGGATTTAAGCCAGTCAACGCTGACGGTGATTATTCCGCAGGCGTATCTGGAATACAGCGATGAAGAGTGGGAT CCACCTTCCCGCTGGGATGAAGGGATTCCCGGCGTATTATTTGACTACAACGTTAACAGCCAGTGGCGACATGCTGAACA TGATGACGGCGATGAATATGACATCAGCGGCAACGGCACGGTGGGTGCCAACCTCGGCGCGTGGCGTTTGCGCGCGGACT GGCAGGCTAACTATCGTCACGAAAATGACAGCGAAGATAAAGACAACTTTGGCTCCAGTTCCGAACAGAACTGGGACTGG AACCGCTATTACGCCTGGCGGGCGATCCCGCAGCTCCGGGCGCAGCTAACGCTGGGCGAAGGATCGCTGGAATCCGATAT TTTCGACGGCTTTAACTATGTTGGCGGCAGCCTTATCACCGACGATCAGATGTTACCGCCTAATCTGCGCGGCTACGCCC CGGATATATCAGGCGTGGCGCGCACCAACGCCAAAGTCACCGTGACCCAGCGCGGGCGGGTGATTTATGAGTCGCAGGTC CCGGCTGGGCCGTTTCGCATTCAGGATATTAATGAAACGGTATCCGGCGATCTACACGTCAAAATTGAAGAACAAAGCGG TCAGGTGCAGGAATATGACGTCAGCACCGCCTCCATTCCGTTTCTGACCCGTCCCGGCCAGGTGCGCTACAAGTTGGCAG CCGGGCGACCGCAGGACTGGGATCACAATATGGAAGGCGGCTTTTTCACCTCAGCCGAAGCCTCCTGGGGGATCGCTAAC GGCTGGTCGCTGTACGGCGGTGCCATCGGTGAGCAGGATTATCAGGCGCTGGCGTTAGGACTGGGGCGCGATCTGGCGCT GCTGGGCGCGTTTTCCGTCGATGTCACCCATTCCCGTGCGACGCTGCCAGAGGGTAGCGCCTACGGCGACGGCACCATTC AGGGTAACTCGTTCCGTGCCAGCTACGCTAAAGATTTTGATGATATAGACAGCCGTCTGACGTTTGCTGGTTATCGCTTT TCCGAAGAAAACTACATGACGATGGACGAGTTTATCGATACGCATAATGACGATAACGATCGTCAGCGCACCGGCCACGA TAAAGAGATGTATACCCTGACGTACAGCCAGAACTTTTCGGCAATAAACGTCAACGCCTATATCAACTACACCCATCGCA CCTACTGGAATCAACCTAACCAGGACAGCTATAACCTGACGCTGTCGCACTATTTCGATGTCGGTGAGGTGCGCGGGATC AGTCTGTCGGTGAACGGTTTTCGCAACGAATATGACAATGAGCGTGATGACGGCGTGTACGTCTCGCTCAGTATTCCGTG GGGCAACAACCGCACGCTGAGCTACAACGGCTCCTTTAGCGATGACAACAACAGCAATCAGGTCGGCTATTACGAGCGCA TTGACGATCGCAATAACTACCAGATCAACGCTGGTCGCGCGGATAACGGTGCGACTCTCGACGGCTACTACCGTTATCAA GCGAGCTATGCCGACATTGACGTCAGTGCGAACTATCAGGAAGGCGACTATACCTCCGGAGGACTGAACATCCAGGGCGG CGCGACGCTGACTGCTAAAGGCGGGGCGTTGCACCGCACCAGCGTCAACGGCGGCTCGCGGCTGCTGGTGGATGTCGGCG ATGAAGCGAACGTACCCATCTCCGGCTACAGCACGCCGGTATATACCAACGCGTTTGGTAAAGCCGTCATTGTCGACGTC AACGACTACTACCGCAACCAGGTGAAAATCGACATTACCCAGTTGCCGGAAGACGCGGAAGCAATCCTCTCCATCGCTCA GGCGACCCTGACGGAAGGGGCGATCGGTTATCGCCGCATGGAGGTGCTCAGCGGTAAAAAAGCCATGGCCAGTATCCGCC TGCGCGATGGCGGCACGCCGCCCTTCGGCGCAGAGGTTTACAACAGTCTCCAGCAACAGTTAGGGATCGTAGGTGAAGAC GGCAGCGTTTATCTGATCGGCATTAACCCCGGCGAGCGGTTGCAGGTGACATGGGAAGGTAAAACGCAGTGTGAAGCGAC GTTGCCCGATCCGCTGCCGGGCGATCTGTTTAGCGGCCTGTTGCTGCCGTGCATCGGCGACGCTTCATCACCTGAGGCAA CGCAGCCCGAAGAGAAACCATTACTCCAGCTTCATACGCAGCGGCGGACGTCTTCGACGCAACCCGAAGCGCTCTCTTCT CGTTATCCAACACATTGA Protein sequence : MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNV ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQ ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSLQQQLGIVGED GSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSS RYPTH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 3e-157 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 5e-152 | 43 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-151 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-151 | 43 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 7e-152 | 43 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-152 | 43 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-152 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STMMW_02021 | YP_005231281.1 | outer membrane usher protein stfc (putative fimbrial outer membrane usher) | VFG1548 | Protein | 3e-152 | 43 |
| STMMW_02021 | YP_005231281.1 | outer membrane usher protein stfc (putative fimbrial outer membrane usher) | VFG0884 | Protein | 3e-152 | 43 |
| STMMW_02021 | YP_005231281.1 | outer membrane usher protein stfc (putative fimbrial outer membrane usher) | VFG0895 | Protein | 2e-152 | 43 |
