Gene Information

Name : STMMW_12551 (STMMW_12551)
Accession : YP_005232310.1
Strain : Salmonella enterica D23580
Genome accession: NC_016854
Putative virulence/resistance : Virulence
Product : outer membrane invasion protein (PagC)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1328849 - 1329319 bp
Length : 471 bp
Strand : +
Note : pfam_scan;Pfam:PF06316; E()=1.7E-25;score=89.3;query10-156;description=Ail_Lom

DNA sequence : 
GTGGGGTATGCACAAAGTAAAGTTCAGGATTTCAAAAATATCCGAGGGGTAAATGTGAAATACCGTTATGAGGATGACTC
TCCGGTAAGTTTTATTTCCTCGCTAAGTTACTTATATGGAGACAGACAGGCTTCCGGGTCTGTTGAGCCTGAAGGTATTC
ATTACCATGACAAGTTTGAGGTGAAGTACGGTTCTTTAATGGTTGGGCCAGCCTATCGATTGTCTGACAATTTTTCGTTA
TACGCGCTGGCGGGTGTCGGCACGGTAAAGGCGACATTTAAAGAACATTCCACTCAGGATGGCGATTCTTTTTCTAACAA
AATTTCCTCAAGGAAAACGGGATTTGCCTGGGGCGCGGGTGTACAGATGAATCCGCTGGAGAATATCGTCGTCGATGTTG
GGTATGAAGGAAGCAACATCTCCTCTACAAAAATAAACGGCTTCAACGTCGGGGTTGGATACCGTTTCTGA

Protein sequence : 
MGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYRLSDNFSL
YALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFNVGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 3e-68 99
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 3e-26 47
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 8e-26 47
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 2e-26 47
pagC AGI37340.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37348.1 PagC Virulence OI-122 Protein 7e-20 43
pagC AGI37351.1 PagC Virulence OI-122 Protein 7e-20 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 3e-19 42
pagC AGI37350.1 PagC Virulence OI-122 Protein 3e-19 42
pagC AGI37341.1 PagC Virulence OI-122 Protein 8e-19 42
pagC AGI37349.1 PagC Virulence OI-122 Protein 8e-19 42
pagC AGI37352.1 PagC Virulence OI-122 Protein 8e-19 42
pagC AGI37337.1 PagC Virulence OI-122 Protein 3e-19 42
pagC AGI37342.1 PagC Virulence OI-122 Protein 3e-19 42
pagC AGI37344.1 PagC Virulence OI-122 Protein 3e-19 42
pagC AGI37343.1 PagC Virulence OI-122 Protein 1e-18 41
pagC AGI37353.1 PagC Virulence OI-122 Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_12551 YP_005232310.1 outer membrane invasion protein (PagC) VFG0442 Protein 3e-35 53