Gene Information

Name : STMMW_11061 (STMMW_11061)
Accession : YP_005232162.1
Strain : Salmonella enterica D23580
Genome accession: NC_016854
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1179604 - 1180350 bp
Length : 747 bp
Strand : -
Note : pfam_scan;Pfam:PF00486; E()=8.8E-26;score=88.7;query165- 240;description=Trans_reg_C; pfam_scan;Pfam:PF00072; E()=4.6E-30;score=103.6;query 25-134;description=Response_reg

DNA sequence : 
ATGACAATTATGTCATCTTGTTGGAGATTTACGGATTCGCTAACAAGCCTATGGCATACTGCGTTGATGAAGATTTTATT
GATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACGGAAGCAGGCTATGTGGTTGATTATGCCTGTG
ATGGACGAGACGGATTACACCTGGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGCTGCCGGGGCTTGAT
GGATGGCAGGTTTTACGCGCGTTACGCACTGCGCATCAGTCCCCTGTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGA
TCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGA
GAGCTCAACTCAGACAGCATGTCCCTGCCTTTACTCGACTGACGATCAATGGTCTGGACATGGATGCCACAAAGCAATCA
GTGTCACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGAGA
AATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGA
TTCGTCGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCGGGGGATGGGTTATCGATTA
CAGGCGGAAACGTCGCAGAATGGTTAA

Protein sequence : 
MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLD
GWQVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLTINGLDMDATKQS
VSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL
QAETSQNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-103 100
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-112 98

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_11061 YP_005232162.1 response regulator BAC0197 Protein 2e-59 59
STMMW_11061 YP_005232162.1 response regulator BAC0083 Protein 9e-56 57
STMMW_11061 YP_005232162.1 response regulator BAC0125 Protein 4e-60 56
STMMW_11061 YP_005232162.1 response regulator BAC0638 Protein 7e-53 56
STMMW_11061 YP_005232162.1 response regulator BAC0308 Protein 8e-55 55
STMMW_11061 YP_005232162.1 response regulator BAC0111 Protein 8e-57 53
STMMW_11061 YP_005232162.1 response regulator BAC0347 Protein 3e-50 52
STMMW_11061 YP_005232162.1 response regulator NC_010079.5776364.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_002952.2859858.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_007622.3794948.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator AE015929.1.gene1106. Protein 2e-34 45
STMMW_11061 YP_005232162.1 response regulator NC_003923.1003417.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_013450.8614146.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_002951.3238224.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_007793.3914065.p0 Protein 3e-40 45
STMMW_11061 YP_005232162.1 response regulator NC_002758.1121390.p0 Protein 3e-40 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STMMW_11061 YP_005232162.1 response regulator VFG0596 Protein 1e-103 100
STMMW_11061 YP_005232162.1 response regulator VFG0473 Protein 7e-30 42
STMMW_11061 YP_005232162.1 response regulator VFG1389 Protein 3e-32 42
STMMW_11061 YP_005232162.1 response regulator VFG1390 Protein 4e-38 41