Gene Information

Name : KPHS_34600 (KPHS_34600)
Accession : YP_005227760.1
Strain : Klebsiella pneumoniae HS11286
Genome accession: NC_016845
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3433717 - 3434979 bp
Length : 1263 bp
Strand : +
Note : -

DNA sequence :
ATGTCCCTTACCGACGCAAAAATCCGCACCCTCAAGCCTTCTGATAAACCCTTTAAAGTCTCCGATTCTCACGGTCTGTA
TCTGCTGGTTAAGCCGGGTGGCTCCCGCCACTGGTATCTCAAATACCGTATTAGCGGTAAAGAATCCCGCATTGCGCTGG
GTGCCTATCCAGCCATCTCCCTGTCTGATGCGCGACAGCAACGTGAAGGTATCCGTAAAATGCTGGCGCTGAATATCAAC
CCGGTACAGCAGCGGGCTGCTGAACGTGGCTCACGAACACCGGAGAAAGTTTTTAAAAACGTGGCGCTGGCGTGGCATAA
AAGTAACAGGAAATGGTCGCAGAACACCGCCGACCGTCTGCTTGCCAGCCTGAACAATCACATCTTTCCGGTCATCGGGA
ACCTACCTGTATCAGAACTTAAACCCCGTCATTTCATTGACCTGCTGAAAGGGATCGAGGAAAAAGGTCTGCTGGAGGTT
GCGTCCCGCACACGGCAGCACCTGAGTAACATAATGCGCCATGCGGTCCATCAGGAGTTAATCGATACGAACCCTGCAGC
AAACCTTGGCGGCGTGACCACACCTCCTGTCAGACGGCACTATCCTGCCCTGCCGCTGGAGCGGCTGCCTGAACTGCTTG
AACGTATTGGGGCATATCATCAGGGCCGTGAACTGACCCGGCATGCCGTTCTGCTGATGCTGCATGTGTTCATTCGCTCC
AGTGAACTGCGTTTCGCCCGCTGGTCAGAGATTGATTTCACAAACCGAGTCTGGACGATACCCGCGACGCGAGAACCCAT
TATTGGCGTGCGTTATTCCGGCCGCGGGGCAAAAATGCGAATGCCGCATATCGTCCCCCTCTCAGAACAGTCCATCGCCA
TTCTGAAACAGATTAAGGATATCACCGGTAATAATGAACTGATCTTCCCCGGCGACCATAACCCGTATAAGCCAATGTCT
GAAAACACGGTCAATAAGGCACTGCGGGTGATGGGTTACGACACGAAAAAGGATATCTGCGGTCACGGCTTCCGGGCAAT
GGCATGCAGTGCGCTGATGGAATCGGGTTTATGGGCAAAGGACGCAGTAGAACGCCAGATGAGTCATCAGGAGCGCAATA
CCGTGCGCATGGCTTATATTCATAAGGCAGAGCACCTAGAAGCCCGCAAAGCGATGATGCAGTGGTGGTCGGATTATCTG
GAAGCATGCCGAGAATCTTATGCACCGCCTTATACAATTGGTAAAAATAAGTTTATCCCATAA

Protein sequence :
MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNIN
PVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEV
ASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS
SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMS
ENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYL
EACRESYAPPYTIGKNKFIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-134 99
int YP_002346908.1 integrase Not tested HPI Protein 0.0 99
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 0.0 99
int2 NP_993013.1 integrase Not tested HPI Protein 0.0 99
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-149 99
int CAA21384.1 - Not tested HPI Protein 0.0 99
int CAB59974.1 integrase Not tested HPI Protein 0.0 99
int CAA08754.1 integrase Not tested HPI Protein 0.0 99
unnamed AAD17660.1 unknown Not tested HPI Protein 0.0 98
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-117 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-117 59
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-107 56
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-114 56
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-107 56
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-114 56
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-107 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-109 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-109 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-108 56
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-108 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-108 56
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-108 56
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-108 56
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-108 56
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-108 56
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-107 56
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-108 56
int CAC81896.1 integrase Not tested LEE II Protein 5e-100 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-107 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-107 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-107 55
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-102 55
int AAK00456.1 Int Not tested SHI-1 Protein 9e-99 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-108 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-108 55
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-92 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-96 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KPHS_34600 YP_005227760.1 integrase VFG0626 Protein 2e-107 56
KPHS_34600 YP_005227760.1 integrase VFG1693 Protein 2e-108 56
KPHS_34600 YP_005227760.1 integrase VFG1536 Protein 7e-103 55