Gene Information

Name : Rahaq2_4893 (Rahaq2_4893)
Accession : YP_005220618.1
Strain :
Genome accession: NC_016835
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 348375 - 349229 bp
Length : 855 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGATGTCCTGGTTTGACGTGCTGATGGAGCCACTGAGCTTCGATTTTATGCAACGCGCGCTGCTGACCGCTGCCGCTAC
CAGTATTGTTTGTGCGATATTTTCCTGTTTTCTGGTGCTCAAAGGCTGGTCGCTGATGGGGGATGCCATCTCCCACGCGG
TGCTTCCGGGCGTGGTGCTGGCGTATCTTGCCGGAATTCCGCTGGTCATTGGCGCATTCGGTTCCGGTCTGTTTTGCGCC
GTAGCTACGGGCTTTATCAAAGAACATTGTCGGGTAAAAGAAGATTCCGTTATGGGGATTGTCTTCTCCGGCATGTTTGC
TGCCGGTCTGGTGCTGTTCTCCAGGGTCAATACCGAACAGCATCTCAGCCACATTTTGTTTGGCAACGTGTTAGGTGTGA
CCGACAGTGAAATGCTGCAAACTCTGATTATCGCCGCTGTCGTGACGCTGGCGATTATCCTCAAATTTAAAGACCTGATG
CTGTTTTGCTTTGATCCGGTGCAGGCGAAAGTTATCGGACTGCCGGTGCGTTTTTATCATTATGCGTTGTTATGTATGCT
GGCGCTGACCATCGTCGCGGCGTTGCAGGCCGTCGGTGTGGTGCTGGTGGTGGCGATGCTGATCACGCCGGGCATTACGG
CGTTTCTGCTGTGTAAGACGTTGCCGAAGATGCTGATGGTTTCCGTGACAACGTCACTTTTTGCCGCCGTCTCAGGTACA
TTTATCAGCTTCTATATTGATGCCGCGACCGGTCCGACTATTGTGCTGGTTCAGGCCGCTATTTTCCTGCTGGCGCTGAC
GGCGAATTTACTGCGCAAAACGATCAAACCGCATCAGGCCGCGCCGAATGTATAG

Protein sequence : 
MMSWFDVLMEPLSFDFMQRALLTAAATSIVCAIFSCFLVLKGWSLMGDAISHAVLPGVVLAYLAGIPLVIGAFGSGLFCA
VATGFIKEHCRVKEDSVMGIVFSGMFAAGLVLFSRVNTEQHLSHILFGNVLGVTDSEMLQTLIIAAVVTLAIILKFKDLM
LFCFDPVQAKVIGLPVRFYHYALLCMLALTIVAALQAVGVVLVVAMLITPGITAFLLCKTLPKMLMVSVTTSLFAAVSGT
FISFYIDAATGPTIVLVQAAIFLLALTANLLRKTIKPHQAAPNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-61 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-61 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-60 55
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-61 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-61 52
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-40 42
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_4893 YP_005220618.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 3e-73 65
Rahaq2_4893 YP_005220618.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 2e-61 52
Rahaq2_4893 YP_005220618.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_4893 YP_005220618.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 2e-61 52