Gene Information

Name : Rahaq2_4890 (Rahaq2_4890)
Accession : YP_005220615.1
Strain :
Genome accession: NC_016835
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter substrate-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 345810 - 346751 bp
Length : 942 bp
Strand : +
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGGGAAAAGGACAAAACATCTTAAAATTATTCAGCTATTCGCCGTTTCGTTTGCGGCTGATGCTGGTCGGCATGATCGT
GGCGCTGATCACCGGAAACGCGCAGGCGGCTGAAAAAGACAAAAAGAAGTTTAAAATCGTCACCACGTTCACGGTGATTC
AGAATATCGCGCAGAATGTTGCCGGTGATGCCGCCACGGTGGAATCAATCACCAAACCTGGCGCAGAAATCCATGATTAT
CAGCCAACACCACGCGATATTGTGAAAACCCAGTCTGCGGATCTGATTCTGTGGAACGGCTTTAATCTCGAACGCTGGTT
TGGCCGCTTCTTCGCGAATATCAAAAATGTGCCTTCGGTGACCGTCACGGACGGCATTGCGCCGCTGCCGATTCAGGAAG
GGCCGTATGTCGGCAACCCGAACCCTCATGCCTGGATGTCTGCCAAAAACGCGCTGGTTTACGTCGAAAATATCCGCGCC
GCACTGGTGAAATATGACCCTGAAAACGCTGCCGTTTATGACCGCAACGCCAAAAGTTACGCCGAAAAAATCAGCCAGCT
CGATGCACCGCTGCGCGAACGGCTGGCGAAAATTCCGGCCGGTCAGCGCTGGCTGGTGACCAGCGAAGGCGCGTTCAGTT
ATCTGGCAAAAGATTATGGTTTGAAAGAAGCCTACCTGTGGCCGATCAATGCTGAAGAGCAGGGCACACCGCAGCAGGTG
AAAAAAATCATTGATCTGGTGCGTCAGCAAAATATTCCGGTGGTCTTCAGCGAAAGCACCATCTCGGACAAACCGGCGAA
GCAGGTCAGCAAAGAGACGGGCGCGAAATATGGCGGCTTGTTGTATGTCGATTCCCTGTCTGCCGCTGACGGGCCGGTGC
CAACCTACATTGATTTGCTGAAAGTCACGGTGGGTACCATTGCAGAAGGATTCGGACAATGA

Protein sequence : 
MGKGQNILKLFSYSPFRLRLMLVGMIVALITGNAQAAEKDKKKFKIVTTFTVIQNIAQNVAGDAATVESITKPGAEIHDY
QPTPRDIVKTQSADLILWNGFNLERWFGRFFANIKNVPSVTVTDGIAPLPIQEGPYVGNPNPHAWMSAKNALVYVENIRA
ALVKYDPENAAVYDRNAKSYAEKISQLDAPLRERLAKIPAGQRWLVTSEGAFSYLAKDYGLKEAYLWPINAEEQGTPQQV
KKIIDLVRQQNIPVVFSESTISDKPAKQVSKETGAKYGGLLYVDSLSAADGPVPTYIDLLKVTVGTIAEGFGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-88 67
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-88 67
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-88 67
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-88 67
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-88 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_4890 YP_005220615.1 metal ion ABC transporter substrate-binding protein BAC0439 Protein 1e-99 77
Rahaq2_4890 YP_005220615.1 metal ion ABC transporter substrate-binding protein BAC0349 Protein 2e-88 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq2_4890 YP_005220615.1 metal ion ABC transporter substrate-binding protein VFG0525 Protein 2e-88 67