Gene Information

Name : STBHUCCB_9400 (STBHUCCB_9400)
Accession : YP_005216516.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Unknown
Product : CP4-like integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 975172 - 976446 bp
Length : 1275 bp
Strand : -
Note : similar to integrase PRK09692; similar to CP4-like integrase of Enterobacteriaceae UniRef RepID=Q8VQN9_ECOLX

DNA sequence :
ATGTCACTGACTGATATTAAAGCAAAAAATGCAAAACCCCTTGAGAAGGAATACAAGCTTACTGATGGCTTTGGTATGTT
CCTTCGTGTTACCCCTAAAGGTTCGAAATACTGGCAAATGGCTTACCGCTTCGAAGGGAAACAAAAACTCTTCTCTATTG
GTGTTTACCCTGCTGTTTCTCTTTCTGACGCAAGACAGCGCCGTGATGAGGCCAGAAGGCTTCTTGCTCAGGGTATTGAC
CCTAATGCAAAGAAACAGGCAGAGGTTAAAGAGCTTAAAGCCAAACGTGATAATACACGCTCCTTCAGAACAGTAGCCAA
AGCGTGGTTCTCCACGAAAACAAAATGGTCTGATGATTATGGTGATGCCGTATGGAAGCGCCTTGAAACTTATGTCTTCC
CGGTAATCGGTGACAAAGATGTTGCCGAACTGGATACGGGTGATCTGCTGGTTCCGGTGAAAAAAGTTGAGGCTCTTGGT
TATCTTGAAGTTGCCATGCGCATTCAACAATACATTACGGCAATCCTGCGTCATGCCGTCCAGCAAAAGCTGATACGCCA
TAACCCAGCCTATGATATGGAAGGTGCAGTTCAGAAACCACAAACTGAACACCGCCCTGCACTTGAGCTGGAAGAAATAC
CCCAGTTACTGAACAAAATTGCCGAATACAAAGGCCGCAGGTTAACCATACTGGCAATACAGCTCAATCTGATGATTTTC
ATTCGTTCCAGTGAGCTGCGTTTCGCTCGCTGGTCAGAAATTGATTTCAAAAGTAAGTTATGGGTGATACCCGAACAGCG
TGAAGCGATTGAAAACGTCAAACATTCAACTCGTGGGGCTAAAATGAAGCGTAAGCACTTAGTTCCCCTTTGTAAGCAGG
CCATGAAGATACTCAAAGAGATCCGACAACTGACTTATGAAGAAGGTCATGATGACGGATTAATCTTTACTGGTTGTTAT
GACTCGTTTAAACCCATGAGCGAAAACACCATCAACAAAGCGCTTCGCAATATGGGCTATGACACAAAGCAGGACATCTG
TGGACACGGTTTCCGCACTCTGGCCTGTAGTGCCTTAATTGAGTCCGGGCTATGGTCAGAAGACGCTGTAGAGCTTCAAA
TGAGCCATAAGGAAAGCAATAGCGTCCGTGCTGCTTATACCCACAAGGCAAAACACCTTGACCAGCGCCGCCTGATGCTC
CAGTGGTGGGCTGATTTCCTTGATGCTAACAGCAACGATATGGTCAGGCCGTTTGAGTTTGATTCAAATAAATAA

Protein sequence :
MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVSLSDARQRRDEARRLLAQGID
PNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALG
YLEVAMRIQQYITAILRHAVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF
IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKILKEIRQLTYEEGHDDGLIFTGCY
DSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSALIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLML
QWWADFLDANSNDMVRPFEFDSNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-116 60
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-116 57
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-117 57
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-116 57
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-116 57
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-116 57
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-116 57
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-116 57
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-116 57
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-116 57
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-116 57
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-114 56
int AAK00456.1 Int Not tested SHI-1 Protein 6e-108 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-116 56
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 6e-116 56
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-113 56
int CAC81896.1 integrase Not tested LEE II Protein 4e-108 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-114 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-115 56
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-115 56
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-115 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-116 56
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-110 55
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-110 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-104 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-104 53
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 8e-71 50
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-82 50
int YP_002346908.1 integrase Not tested HPI Protein 1e-97 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-97 50
int2 NP_993013.1 integrase Not tested HPI Protein 1e-97 50
int CAA21384.1 - Not tested HPI Protein 1e-97 50
int CAA08754.1 integrase Not tested HPI Protein 1e-97 50
int CAB59974.1 integrase Not tested HPI Protein 7e-98 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-100 50
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-98 49
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-94 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_9400 YP_005216516.1 CP4-like integrase VFG1536 Protein 3e-116 60
STBHUCCB_9400 YP_005216516.1 CP4-like integrase VFG0626 Protein 2e-116 57
STBHUCCB_9400 YP_005216516.1 CP4-like integrase VFG1693 Protein 5e-115 56