Gene Information

Name : STBHUCCB_46080 (STBHUCCB_46080)
Accession : YP_005220024.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipA/tviB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4493695 - 4494972 bp
Length : 1278 bp
Strand : -
Note : similar to UDP-N-acetyl-D-mannosamine dehydrogenase PRK11064; similar to Vi polysaccharide biosynthesis protein vipA/tviB of cellular organisms UniRef RepID=VIPA_SALTI

DNA sequence : 
GTGTTCGGTATAGACGAGGTAAAAATCGCGATTATTGGGCTGGGATATGTTGGGCTTCCTCTGGCAGTTGAATTTGGCAA
ATCTCGTCAGGTTGTTGGCTTCGACGTTAATAAAAAGCGTATTCTTGAATTAAAGAATGGGGTGGATGTCAATCTGGAAA
CCACTGAAGAAGAATTACGTGAGGCTCGTTATCTGAAATTTACTTCCGAGATTGAGAAGATCAAAGAATGTAATTTTTAC
ATCATCACCGTCCCGACGCCGATAAATACCTACAAGCAACCAGACCTCACCCCACTAATCAAGGCGAGTGAAACCGTTGG
TACAGTGCTGAATCGGGGAGATATTGTGGTATATGAATCTACGGTATATCCGGGATGTACCGAAGAAGAATGCGTGCCGA
TCCTTGCTCGTATGTCCGGAATGACTTTCAACCAGGATTTCTATGTCGGTTATAGCCCGGAAAGGATCAATCCCGGTGAT
AAAAAGCACCGTTTAACCAACATCAAGAAAATCACCTCCGGTTCAACCGCACAGATCGCCGAACTTATCGATGAAGTATA
TCAGCAGATCATCAGCGCAGGTACATATAAAGCAGAGAGCATCAAAGTTGCTGAGGCAGCGAAGGTGATTGAAAATACGC
AACGCGATCTGAATATTGCCTTGGTCAATGAGCTGGCGATTATTTTTAATCGTTTAAATATCGATACTGAAGCCGTGCTA
CGTGCCGCTGGCAGCAAATGGAATTTCCTGCCATTCCGTCCGGGACTGGTCGGTGGTCACTGTATTGGCGTAGATCCCTA
TTATCTGACACATAAATCTCAGGGCATTGGCTATTATCCAGAAATCATACTTGCAGGACGCCGCCTGAACGACAACATGG
GCAACTATGTCTCCGAGCAGTTGATCAAAGCAATGATCAAAAAAGGAATTAACGTTGAGGGTTCCAGCGTGCTGATTCTC
GGCTTTACCTTTAAAGAAAACTGTCCGGACATCAGAAATACACGCATTATTGATGTGGTAAAGGAACTCGGTAAATATAG
TTGTAAAGTGGATATTTTTGATCCATGGGTGGATGCCGAAGAGGTAAGACGAGAGTATGGCATTATCCCGGTATCGGAAG
TCAAATCAAGCCACTACGATGCGATCATTGTTGCAGTAGGACATCAGCAATTTAAACAGATGGGAAGTGAGGATATTCGC
GGCTTCGGAAAAGATAAACATGTACTTTATGATTTGAAGTATGTTCTTCCGGCTGAGCAGTCAGATGTGAGATTGTAA

Protein sequence : 
MFGIDEVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFY
IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGD
KKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVL
RAAGSKWNFLPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLIL
GFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGHQQFKQMGSEDIR
GFGKDKHVLYDLKYVLPAEQSDVRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 0.0 100
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 0.0 100
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-105 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_46080 YP_005220024.1 Vi polysaccharide biosynthesis protein vipA/tviB VFG0431 Protein 0.0 100