Gene Information

Name : STBHUCCB_32730 (STBHUCCB_32730)
Accession : YP_005218762.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Transcriptional regulatory protein qseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3172436 - 3173095 bp
Length : 660 bp
Strand : +
Note : similar to DNA-binding transcriptional regulator QseB PRK10336; similar to Transcriptional regulatory protein qseB of Gammaproteobacteria UniRef RepID=QSEB_SALTI

DNA sequence : 
ATGCGAATTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCAGGTCTGAGTAAAATGGGTTTCAGCGT
CGACTGGTTTACCGAGGGACGTCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTCATTTTAGATTTAACGC
TGCCAGGAATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCAGTACTGATCCTGACGGCG
CGCGACGCGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGA
GGTCGCCGCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGC
TCAATCCAGGCAATCTCGTCGCGACGCTTGCCGGCGAACCGCTGGCCCTAAAACCAAAAGAGTTCGCGTTGCTGGAACTC
TTACTGCGCAACAAAGGTCGCGTGCTACCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAG
CAATGCAGTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCT
ACACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0487 Protein 1e-34 46
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0308 Protein 2e-30 43
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0638 Protein 6e-26 42
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB NC_002516.2.879194.p Protein 2e-23 41
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0347 Protein 3e-28 41
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0111 Protein 3e-28 41
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0083 Protein 2e-30 41
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB BAC0197 Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB VFG0473 Protein 7e-35 47
STBHUCCB_32730 YP_005218762.1 Transcriptional regulatory protein qseB VFG1390 Protein 2e-26 41